Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.3e-104 381.7 195 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.4e-54 216.9 286 48.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 8.6e-44 181.0 287 40.1
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 7.3e-43 177.9 266 39.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 9.5e-43 177.6 294 39.8
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 3.4e-40 169.1 277 39.4
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 7.6e-40 167.9 261 41.0
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.8e-39 165.6 286 38.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.4e-38 163.7 271 38.7
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.4e-38 162.9 275 38.9
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 7.8e-37 157.9 271 38.7
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 3.0e-36 156.0 262 38.5
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 6.6e-36 154.8 275 38.5
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.6e-35 151.8 281 34.9
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.2e-34 150.6 260 38.1
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.6e-34 150.2 281 36.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.1e-34 149.8 264 37.9
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.6e-34 149.1 281 36.7
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 4.7e-34 148.7 283 35.3
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.2e-34 148.3 264 36.4
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.4e-33 147.1 280 34.6
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.8e-33 146.7 260 37.7
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.4e-33 146.4 260 37.3
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.4e-33 146.4 286 36.4
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 5.2e-33 145.2 270 37.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 6.9e-33 144.8 281 34.5
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 6.9e-33 144.8 281 37.0
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.5e-32 143.7 281 34.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.5e-32 143.7 264 35.6
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.5e-32 143.7 282 35.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.0e-32 143.3 270 37.0
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 2.6e-32 142.9 280 35.7
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.6e-32 142.9 274 35.8
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.6e-32 142.9 282 35.1
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.4e-32 142.1 279 34.1
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 5.8e-32 141.7 269 35.7
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 9.9e-32 141.0 280 33.9
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.2e-31 139.8 267 35.2
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.8e-31 139.0 282 34.4
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 4.9e-31 138.7 280 33.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 4.9e-31 138.7 94 68.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 6.4e-31 138.3 271 35.1
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 8.4e-31 137.9 271 35.1
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 3.2e-30 136.0 280 34.6
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 5.4e-30 135.2 281 33.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.4e-30 135.2 279 34.8
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.2e-29 134.0 270 35.9
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-29 134.0 280 33.6
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.7e-29 132.9 279 34.1
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 4.6e-29 132.1 295 31.2
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 6.0e-29 131.7 271 34.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 7.8e-29 131.3 291 32.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.3e-28 130.6 298 32.9
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.3e-28 130.6 290 33.4
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.7e-28 130.2 281 32.4
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.7e-28 130.2 263 34.6
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.3e-28 129.8 270 35.2
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.9e-28 129.0 324 30.6
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 8.7e-28 127.9 262 34.0
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-27 127.1 291 33.0
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.9e-27 126.7 286 31.1
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.9e-27 126.7 274 33.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-27 125.9 332 30.1
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-27 125.9 330 30.3
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 3.3e-27 125.9 257 34.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 3.3e-27 125.9 279 33.7
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 4.3e-27 125.6 275 32.4
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 4.3e-27 125.6 276 32.2
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.3e-26 124.0 304 31.9
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.3e-26 124.0 102 59.8
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.1e-26 123.2 265 34.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.1e-26 123.2 270 34.1
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.1e-26 123.2 272 33.8
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 4.8e-26 122.1 279 32.6
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.4e-25 119.8 275 32.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.0e-25 119.0 275 32.7
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 6.9e-25 118.2 101 57.4
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 9.0e-25 117.9 100 59.0
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-24 117.5 264 33.3
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-24 117.5 264 33.3
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.5e-24 117.1 277 33.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.0e-24 116.7 323 29.4
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 3.4e-24 115.9 99 58.6
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 3.4e-24 115.9 271 29.5
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 4.5e-24 115.5 254 34.6
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.5e-24 115.5 306 31.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 7.6e-24 114.8 294 29.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-23 113.6 271 29.5
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 6.4e-23 111.7 138 46.4
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.1e-22 110.9 282 30.1
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.9e-22 110.2 270 31.9
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 9.3e-22 107.8 269 29.7
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.2e-21 107.5 266 28.2
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.2e-21 107.5 262 31.3
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.1e-21 106.7 94 61.7
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.5e-21 105.9 97 56.7
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 4.6e-21 105.5 295 27.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 7.9e-21 104.8 281 28.1
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.9e-21 104.8 94 60.6
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.8e-20 103.6 117 49.6
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.8e-20 103.6 266 30.1
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.3e-20 103.2 281 29.2
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.5e-19 100.5 103 50.5
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.5e-19 100.5 277 29.6
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.9e-19 100.1 101 49.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 7.4e-19 98.2 103 47.6
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.1e-17 92.8 280 27.1
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.0e-17 92.4 101 45.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 5.3e-17 92.0 266 26.7
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 9.0e-17 91.3 99 46.5
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-16 90.9 268 28.0
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.0e-16 90.1 104 46.2
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 2.6e-16 89.7 270 27.8
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.5e-16 89.0 263 29.3
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.8e-16 88.6 105 44.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 9.9e-16 87.8 269 26.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.3e-15 87.4 102 43.1
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.3e-15 87.4 112 41.1
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.9e-15 86.3 265 27.9
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.9e-15 86.3 265 27.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 3.8e-15 85.9 265 27.9
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 8.4e-15 84.7 265 27.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.4e-15 84.7 104 45.2
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 8.4e-15 84.7 113 40.7
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.4e-14 84.0 265 27.5
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.4e-14 83.2 102 42.2
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.2e-14 82.8 112 39.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.2e-14 82.4 209 31.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.1e-13 80.1 263 27.4
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.7e-13 79.7 93 44.1
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 3.5e-13 79.3 103 42.7
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.6e-13 79.0 104 39.4
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 6.0e-13 78.6 103 40.8
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.9e-13 78.2 274 24.1
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.9e-13 78.2 104 41.3
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.3e-12 77.4 104 40.4
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.3e-12 77.4 283 24.7
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.3e-12 77.4 105 42.9
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.8e-12 77.0 105 39.0
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.8e-12 77.0 105 40.0
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 3.0e-12 76.3 105 40.0
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 3.3e-11 72.8 82 47.6
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 6.2e-10 68.6 96 40.6
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-09 67.0 203 27.6


User provided reference genes

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