Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21751 Davidia involucrata HOM05D000157 ORTHO05D000311 1.1e-81 306.6 159 100.0
Dinv10602 Davidia involucrata HOM05D000086 ORTHO05D000311 2.3e-42 176.0 128 71.9
MSTRG.27319 Avicennia marina HOM05D000157 ORTHO05D000311 1.2e-32 143.7 125 57.6
Migut.F00662 Erythranthe guttata HOM05D000157 ORTHO05D000311 1.1e-31 140.6 132 56.1
Nitab4.5_0000058g0320 Nicotiana tabacum HOM05D000157 ORTHO05D000311 5.2e-31 138.3 124 56.5
Peaxi162Scf00284g00715 Petunia axillaris HOM05D000157 ORTHO05D000311 6.8e-31 137.9 123 59.3
Ciclev10032946m.g Citrus clementina HOM05D000157 ORTHO05D000311 8.9e-31 137.5 130 56.9
Oeu034917.1 Olea europaea HOM05D000086 ORTHO05D000311 8.9e-31 137.5 129 59.7
VMungo1383G2255 Vigna mungo HOM05D000157 ORTHO05D000311 1.5e-30 136.7 132 53.8
Cc02_g06240 Coffea canephora HOM05D000086 ORTHO05D000311 2.0e-30 136.3 127 55.9
Lsat_1_v5_gn_2_124020 Lactuca sativa HOM05D000157 ORTHO05D000311 2.6e-30 136.0 129 54.3
Glyma.18G025700 Glycine max HOM05D000086 ORTHO05D000311 4.4e-30 135.2 133 53.4
Glyma.11G231400 Glycine max HOM05D000086 ORTHO05D000311 2.9e-29 132.5 133 51.9
HanXRQChr14g0459461 Helianthus annuus HOM05D000086 ORTHO05D000311 3.7e-29 132.1 128 53.1
HanXRQChr07g0203161 Helianthus annuus HOM05D000086 ORTHO05D000311 1.1e-28 130.6 127 50.4
Thecc.10G013500 Theobroma cacao HOM05D000157 ORTHO05D000311 1.4e-28 130.2 132 49.2
Sc10g0002490 Simmondsia chinensis HOM05D000157 ORTHO05D000311 3.2e-28 129.0 130 53.1
QL08p063447 Quercus lobata HOM05D000157 ORTHO05D000311 9.2e-28 127.5 134 51.5
COL.COLO4_00279 Corchorus olitorius HOM05D000086 ORTHO05D000311 1.2e-27 127.1 134 53.0
Atru.chr12.91 Acer truncatum HOM05D000086 ORTHO05D000311 1.6e-27 126.7 135 50.4
Manes.10G010400 Manihot esculenta HOM05D000086 ORTHO05D000311 2.1e-27 126.3 138 50.0
Sabra08G0052300 Salix brachista HOM05D000086 ORTHO05D000311 2.1e-27 126.3 133 50.4
Hund13881 Selenicereus undatus HOM05D000086 ORTHO05D000311 2.1e-27 126.3 126 49.2
PGSC0003DMG400015661 Solanum tuberosum HOM05D000086 ORTHO05D000311 2.1e-27 126.3 129 51.9
Duzib114G1050 Durio zibethinus HOM05D000157 ORTHO05D000311 1.7e-26 123.2 130 49.2
Phvul.001G244600 Phaseolus vulgaris HOM05D000157 ORTHO05D000311 1.7e-26 123.2 132 50.8
Potri.008G071000 Populus trichocarpa HOM05D000086 ORTHO05D000311 2.3e-26 122.9 133 48.9
Haze_17247 Corylus avellana HOM05D000157 ORTHO05D000311 3.9e-26 122.1 125 52.0
TPR.G11207 Trifolium pratense HOM05D000086 ORTHO05D000311 6.6e-26 121.3 130 48.5
TAR623G0491 Trochodendron aralioides HOM05D000086 ORTHO05D000311 1.1e-25 120.6 128 50.8
Rhsim09G0178600 Rhododendron simsii HOM05D000157 ORTHO05D000311 2.5e-25 119.4 128 49.2
Gohir.A06G162500 Gossypium hirsutum HOM05D000157 ORTHO05D000311 3.3e-25 119.0 130 44.6
Sopen06g017190 Solanum pennellii HOM05D000086 ORTHO05D000311 3.3e-25 119.0 123 48.0
TWI09G1268 Tripterygium wilfordii HOM05D000086 ORTHO05D000311 3.3e-25 119.0 130 50.8
Peaxi162Scf00484g00008 Petunia axillaris HOM05D000157 ORTHO05D000311 5.6e-25 118.2 124 52.4
PSO017G0017 Papaver somniferum HOM05D000157 ORTHO05D000311 9.6e-25 117.5 138 44.9
Solyc06g051250.1 Solanum lycopersicum HOM05D000086 ORTHO05D000311 9.6e-25 117.5 133 46.6
AUR62022913 Chenopodium quinoa HOM05D000086 ORTHO05D000311 1.2e-24 117.1 134 46.3
Ca_15137_v3 Cicer arietinum L. HOM05D000086 ORTHO05D000311 1.2e-24 117.1 130 49.2
Gohir.D06G168000 Gossypium hirsutum HOM05D000157 ORTHO05D000311 1.2e-24 117.1 130 43.8
Nitab4.5_0000683g0070 Nicotiana tabacum HOM05D000157 ORTHO05D000311 1.2e-24 117.1 125 51.2
Oeu004682.1 Olea europaea HOM05D000440 ORTHO05D000311 2.8e-24 115.9 125 50.4
vmacro10030 Vaccinium macrocarpon HOM05D000157 ORTHO05D000311 2.8e-24 115.9 120 49.2
Gorai.010G195900 Gossypium raimondii HOM05D000157 ORTHO05D000311 3.6e-24 115.5 130 43.1
TAR636G1112 Trochodendron aralioides HOM05D000086 ORTHO05D000311 4.7e-24 115.2 130 50.8
TAR636G3133 Trochodendron aralioides HOM05D000086 ORTHO05D000311 4.7e-24 115.2 130 50.8
Sed0024787 Sechium edule HOM05D000157 ORTHO05D000311 6.2e-24 114.8 130 49.2
Cfa001299 Carpinus fangiana HOM05D000157 ORTHO05D000311 8.1e-24 114.4 122 50.0
Medtr3g071300 Medicago truncatula HOM05D000157 ORTHO05D000311 8.1e-24 114.4 130 45.4
PSO170G0598 Papaver somniferum HOM05D000086 ORTHO05D000311 2.4e-23 112.8 134 43.3
MBI15_g13978_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D000311 5.2e-23 111.7 127 47.2
Nn2g13195 Nelumbo nucifera HOM05D000086 ORTHO05D000311 5.2e-23 111.7 127 50.4
CiPaw.02G194000 Carya illinoinensis HOM05D000157 ORTHO05D000311 8.9e-23 110.9 127 51.2
Lsat_1_v5_gn_9_62281 Lactuca sativa HOM05D000086 ORTHO05D000311 8.9e-23 110.9 134 49.3
Lj6g0009441 Lotus japonicus HOM05D000086 ORTHO05D000311 1.5e-22 110.2 130 45.4
Duzib128G2006 Durio zibethinus HOM05D000086 ORTHO05D000311 2.0e-22 109.8 130 43.1
CANSAT56G3355 Cannabis sativa HOM05D000157 ORTHO05D000311 3.4e-22 109.0 125 43.2
Eucgr.J00188 Eucalyptus grandis HOM05D000086 ORTHO05D000311 3.4e-22 109.0 135 46.7
THA.LOC104826846 Tarenaya hassleriana HOM05D000086 ORTHO05D000311 3.4e-22 109.0 130 48.5
Lalb_Chr23g0276961 Lupinus albus HOM05D000157 ORTHO05D000311 4.4e-22 108.6 133 45.9
ClCG07G004370 Citrullus lanatus HOM05D000086 ORTHO05D000311 7.6e-22 107.8 138 44.9
MD01G1155300 Malus domestica HOM05D000157 ORTHO05D000311 9.9e-22 107.5 129 41.1
Eucgr.L00233 Eucalyptus grandis HOM05D000157 ORTHO05D000311 1.3e-21 107.1 130 44.6
MELO3C018366.2 Cucumis melo HOM05D000157 ORTHO05D000311 2.2e-21 106.3 124 46.0
CsaV3_5G010310 Cucumis sativus L. HOM05D000157 ORTHO05D000311 2.2e-21 106.3 124 46.0
PGR044G0801 Punica granatum HOM05D000086 ORTHO05D000311 4.9e-21 105.1 138 44.9
RcHm_v2.0_Chr1g0370601 Rosa chinensis HOM05D000157 ORTHO05D000311 1.4e-20 103.6 132 45.5
Lalb_Chr08g0231611 Lupinus albus HOM05D000086 ORTHO05D000311 1.9e-20 103.2 132 49.2
THA.LOC104823183 Tarenaya hassleriana HOM05D000086 ORTHO05D000311 2.4e-20 102.8 127 44.9
ATR0681G277 Amborella trichopoda HOM05D000086 ORTHO05D000311 1.2e-19 100.5 129 39.5
Glyma.02G264800 Glycine max HOM05D000440 ORTHO05D000311 1.2e-19 100.5 130 42.3
FAN01G2645 Fragaria x ananassa HOM05D000157 ORTHO05D000311 1.6e-19 100.1 130 43.1
Phvul.008G222500 Phaseolus vulgaris HOM05D000086 ORTHO05D000311 2.7e-19 99.4 132 42.4
LjContig00357g0025849 Lotus japonicus HOM05D000086 ORTHO05D000311 7.8e-19 97.8 132 43.9
Prupe.2G252900 Prunus persica HOM05D000157 ORTHO05D000311 1.7e-18 96.7 129 41.1
SGA_v2.0_scaffold60G20979 Striga asiatica HOM05D000157 ORTHO05D000311 2.3e-18 96.3 95 55.8
CANSAT56G0444 Cannabis sativa HOM05D000157 ORTHO05D000311 6.6e-18 94.7 116 41.4
PGSC0003DMG400027719 Solanum tuberosum HOM05D000086 ORTHO05D000311 1.9e-17 93.2 122 42.6
FAN10G3483 Fragaria x ananassa HOM05D000157 ORTHO05D000311 5.6e-17 91.7 128 39.8
Gohir.A10G239600 Gossypium hirsutum HOM05D000157 ORTHO05D000311 7.3e-17 91.3 129 38.8
AT3G11110 Arabidopsis thaliana HOM05D000086 ORTHO05D000311 9.6e-17 90.9 124 39.5
arahy.Tifrunner.gnm1.ann1.VN1U1F Arachis hypogaea HOM05D000157 ORTHO05D000311 9.6e-17 90.9 135 37.8
Psat2g032400 Pisum sativum HOM05D000086 ORTHO05D000311 1.3e-16 90.5 129 41.1
Thhalv10022203m.g Eutrema salsugineum HOM05D000086 ORTHO05D000311 1.6e-16 90.1 122 39.3
Aa31LG3G4280 Aethionema arabicum HOM05D000086 ORTHO05D000311 2.1e-16 89.7 124 42.7
TWI79G0751 Tripterygium wilfordii HOM05D000086 ORTHO05D000311 1.4e-15 87.0 127 37.8
A05p38160 Brassica napus HOM05D000086 ORTHO05D000311 2.4e-15 86.3 123 37.4
BraA05t22609Z Brassica rapa HOM05D000086 ORTHO05D000311 2.4e-15 86.3 123 37.4
CARHR085690 Cardamine hirsuta HOM05D000086 ORTHO05D000311 2.4e-15 86.3 124 41.1
Ca_05980_v3 Cicer arietinum L. HOM05D003447 ORTHO05D003967 2.4e-15 86.3 136 41.2
FvH4_7g24750 Fragaria vesca HOM05D000157 ORTHO05D000311 2.4e-15 86.3 130 38.5
BolC5t34360H Brassica oleracea HOM05D000086 ORTHO05D000311 3.1e-15 85.9 123 37.4
Carub.0003s1042 Capsella rubella HOM05D000086 ORTHO05D000311 3.1e-15 85.9 124 41.1
MSTRG.8938 Avicennia marina HOM05D000086 ORTHO05D000311 4.0e-15 85.5 121 40.5
C05p56970 Brassica napus HOM05D000086 ORTHO05D000311 4.0e-15 85.5 122 38.5
HanXRQChr09g0251761 Helianthus annuus HOM05D000086 ORTHO05D000311 4.0e-15 85.5 129 38.8
MD11G1068200 Malus domestica HOM05D000086 ORTHO05D000311 5.3e-15 85.1 135 37.0
AL3G22650 Arabidopsis lyrata HOM05D000086 ORTHO05D000311 9.0e-15 84.3 125 40.0
Ah.10g036650 Amaranthus hybridus HOM05D000157 ORTHO05D000311 3.4e-14 82.4 126 36.5
Sp3g09430 Schrenkiella parvula HOM05D000086 ORTHO05D000311 3.4e-14 82.4 122 38.5
Medtr5g082940 Medicago truncatula HOM05D000086 ORTHO05D000311 4.4e-14 82.0 130 38.5
Prupe.6G053600 Prunus persica HOM05D000086 ORTHO05D000311 4.4e-14 82.0 135 37.0
Gohir.D10G251500 Gossypium hirsutum HOM05D000157 ORTHO05D000311 5.8e-14 81.6 129 36.4
Gorai.011G292000 Gossypium raimondii HOM05D000157 ORTHO05D000311 5.8e-14 81.6 129 36.4
Hma1.2p1_1981F.1_g309960 Hydrangea macrophylla HOM05D000157 ORTHO05D000311 9.9e-14 80.9 134 38.8
Hma1.2p1_2504F.1_g323405 Hydrangea macrophylla HOM05D000157 ORTHO05D000311 9.9e-14 80.9 134 38.8
Hma1.2p1_2504F.1_g323408 Hydrangea macrophylla HOM05D000157 ORTHO05D000311 9.9e-14 80.9 134 38.8
Thecc.09G352500 Theobroma cacao HOM05D000086 ORTHO05D000311 9.9e-14 80.9 126 38.1
Aqoxy4G02455 Aquilegia oxysepala HOM05D000086 ORTHO05D000311 1.7e-13 80.1 118 39.8
Cpa.g.sc2.424 Carica papaya HOM05D000086 ORTHO05D000311 1.7e-13 80.1 145 35.2
C03p44690 Brassica napus HOM05D000086 ORTHO05D000311 3.8e-13 79.0 124 37.1
Lalb_Chr17g0346851 Lupinus albus HOM05D000086 ORTHO05D000311 4.9e-13 78.6 129 37.2
Ah.16g103690 Amaranthus hybridus HOM05D000086 ORTHO05D000311 1.9e-12 76.6 126 34.1
A03p36890 Brassica napus HOM05D000086 ORTHO05D000311 1.9e-12 76.6 124 35.5
BcaC01g04145 Brassica carinata HOM05D000086 ORTHO05D000311 2.4e-12 76.3 124 35.5
FAN06G2507 Fragaria x ananassa HOM05D000157 ORTHO05D000311 3.2e-12 75.9 130 37.7
Os01g0830900 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 3.2e-12 75.9 138 31.9
BolC3t16731H Brassica oleracea HOM05D000086 ORTHO05D000311 7.1e-12 74.7 121 36.4
BcaC05g29402 Brassica carinata HOM05D000086 ORTHO05D000311 1.6e-11 73.6 111 37.8
Glyma.14G058000 Glycine max HOM05D000086 ORTHO05D000311 1.6e-11 73.6 128 35.2
BraA03t12852Z Brassica rapa HOM05D000086 ORTHO05D000311 6.0e-11 71.6 121 34.7
COL.COLO4_11090 Corchorus olitorius HOM05D000086 ORTHO05D000311 3.9e-10 68.9 134 32.1
DCAR_024816 Daucus carota HOM05D000157 ORTHO05D000311 5.1e-10 68.6 125 31.2
MD03G1064400 Malus domestica HOM05D000086 ORTHO05D000311 6.6e-10 68.2 135 34.8
HPP92_015578 Vanilla planifolia HOM05D000086 ORTHO05D000311 1.1e-09 67.4 127 33.1
Oeu033569.1 Olea europaea HOM05D000086 ORTHO05D000311 2.5e-09 66.2 136 36.0
Oeu034918.1 Olea europaea HOM05D000086 ORTHO05D000311 3.3e-09 65.9 82 48.8
EL10Ac2g04859 Beta vulgaris HOM05D000086 ORTHO05D000311 3.6e-08 62.4 46 56.5
Manes.01G067200 Manihot esculenta HOM05D000157 ORTHO05D000311 1.1e-07 60.8 128 30.5
CSS0035204 Camellia sinensis var. sinensis HOM05D000440 ORTHO05D000311 4.0e-07 58.9 137 29.2
Lj8C64G7 Lonicera japonica HOM05D000157 ORTHO05D000311 5.3e-07 58.5 74 44.6
BolC1t04735H Brassica oleracea HOM05D000086 ORTHO05D000311 1.5e-06 57.0 133 32.3
Os05g0468900 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 5.8e-06 55.1 146 30.8
HanXRQChr13g0414001 Helianthus annuus HOM05D000157 ORTHO05D000311 9.9e-06 54.3 131 31.3
Rhsim04G0126300 Rhododendron simsii HOM05D000440 ORTHO05D000311 9.9e-06 54.3 134 37.3


User provided reference genes

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