Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 2.8e-72 275.4 161 100.0
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.3e-26 123.6 134 59.0
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.1e-23 110.9 139 48.9
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.3e-21 107.1 135 48.9
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 3.8e-21 105.5 135 45.2
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.9e-20 103.2 141 45.4
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 9.4e-20 100.9 139 46.0
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.6e-19 99.0 137 46.0
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 3.6e-19 99.0 137 46.0
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 7.9e-19 97.8 137 45.3
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.9e-19 97.8 137 45.3
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 7.9e-19 97.8 132 47.7
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 7.9e-19 97.8 61 82.0
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 1.8e-18 96.7 65 70.8
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 3.0e-18 95.9 62 77.4
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 3.0e-18 95.9 62 75.8
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 3.9e-18 95.5 66 68.2
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.9e-18 95.5 68 73.5
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 3.9e-18 95.5 96 58.3
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 6.7e-18 94.7 72 66.7
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 6.7e-18 94.7 68 67.6
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 6.7e-18 94.7 133 45.9
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 8.8e-18 94.4 58 81.0
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 8.8e-18 94.4 135 43.7
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 8.8e-18 94.4 65 69.2
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 8.8e-18 94.4 137 44.5
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 8.8e-18 94.4 134 43.3
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 1.1e-17 94.0 93 55.9
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.1e-17 94.0 61 78.7
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.5e-17 93.6 65 67.7
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.5e-17 93.6 64 71.9
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 1.5e-17 93.6 61 78.7
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 1.5e-17 93.6 61 78.7
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.5e-17 93.6 68 66.2
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.0e-17 93.2 58 77.6
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 2.0e-17 93.2 58 77.6
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.0e-17 93.2 62 72.6
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 2.0e-17 93.2 78 64.1
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 2.6e-17 92.8 88 61.4
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 2.6e-17 92.8 64 70.3
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.6e-17 92.8 62 74.2
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 2.6e-17 92.8 64 70.3
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 3.3e-17 92.4 58 77.6
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 3.3e-17 92.4 58 77.6
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 3.3e-17 92.4 57 82.5
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.3e-17 92.4 141 40.4
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 3.3e-17 92.4 62 72.6
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 3.3e-17 92.4 64 68.8
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 3.3e-17 92.4 58 79.3
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 4.4e-17 92.0 79 64.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 4.4e-17 92.0 66 65.2
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 5.7e-17 91.7 58 77.6
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 5.7e-17 91.7 66 66.7
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.7e-17 91.7 68 70.6
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 5.7e-17 91.7 68 70.6
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 5.7e-17 91.7 136 41.9
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 7.4e-17 91.3 62 72.6
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 7.4e-17 91.3 58 77.6
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 9.7e-17 90.9 61 72.1
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 9.7e-17 90.9 60 76.7
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 9.7e-17 90.9 58 75.9
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.3e-16 90.5 61 75.4
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.3e-16 90.5 63 68.3
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.3e-16 90.5 63 68.3
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 1.3e-16 90.5 61 75.4
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.3e-16 90.5 61 75.4
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.7e-16 90.1 66 65.2
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 2.2e-16 89.7 62 71.0
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.2e-16 89.7 58 75.9
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 2.2e-16 89.7 62 75.8
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.2e-16 89.7 63 68.3
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.2e-16 89.7 63 69.8
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 2.2e-16 89.7 58 74.1
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 2.2e-16 89.7 73 61.6
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 2.2e-16 89.7 63 68.3
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.2e-16 89.7 58 75.9
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 2.8e-16 89.4 80 57.5
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 3.7e-16 89.0 62 69.4
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 4.8e-16 88.6 68 64.7
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.8e-16 88.6 93 51.6
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.8e-16 88.6 93 51.6
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 4.8e-16 88.6 62 74.2
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 4.8e-16 88.6 68 66.2
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 6.3e-16 88.2 58 74.1
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 6.3e-16 88.2 57 75.4
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 6.3e-16 88.2 58 74.1
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 6.3e-16 88.2 133 41.4
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 8.2e-16 87.8 58 74.1
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 8.2e-16 87.8 58 74.1
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 8.2e-16 87.8 57 73.7
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 8.2e-16 87.8 58 74.1
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.2e-16 87.8 62 69.4
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 8.2e-16 87.8 63 66.7
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 8.2e-16 87.8 62 72.6
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.4e-15 87.0 58 72.4
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.4e-15 86.3 95 49.5
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 2.4e-15 86.3 59 71.2
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 3.1e-15 85.9 54 75.9
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 3.1e-15 85.9 54 75.9
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 3.1e-15 85.9 139 44.6
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.1e-15 85.5 60 71.7
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 5.3e-15 85.1 96 49.0
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 5.3e-15 85.1 95 49.5
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 5.3e-15 85.1 61 67.2
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 6.9e-15 84.7 64 64.1
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 6.9e-15 84.7 133 42.9
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 6.9e-15 84.7 57 73.7
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.2e-14 84.0 83 54.2
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.5e-14 83.6 57 71.9
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.0e-14 83.2 57 71.9
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 2.6e-14 82.8 57 71.9
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 3.4e-14 82.4 54 72.2
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 4.5e-14 82.0 96 50.0
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 5.9e-14 81.6 54 75.9
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 7.7e-14 81.3 57 70.2
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.3e-13 80.5 54 75.9
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.2e-13 79.7 54 74.1
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 8.5e-13 77.8 54 68.5
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.1e-12 77.4 54 70.4
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.4e-12 77.0 64 57.8
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.9e-12 76.6 58 65.5
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 2.5e-12 76.3 58 65.5
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.5e-12 76.3 89 49.4
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 7.2e-12 74.7 85 47.1
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 9.4e-12 74.3 58 62.1
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 1.6e-11 73.6 56 64.3
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 8.0e-11 71.2 58 60.3
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.8e-10 70.1 43 79.1
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 8.8e-10 67.8 61 54.1
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.3e-08 63.9 45 68.9
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 1.3e-08 63.9 56 55.4
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 2.4e-07 59.7 58 53.4
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 7.0e-07 58.2 62 45.2


User provided reference genes

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