Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 2.3e-81 305.4 147 100.0
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.8e-73 279.3 146 91.8
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.1e-67 260.0 144 84.0
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 5.5e-67 257.7 146 82.2
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 1.6e-66 256.1 146 80.8
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.5e-66 255.0 144 81.9
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 4.6e-66 254.6 146 80.1
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 7.9e-66 253.8 146 80.8
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 7.9e-66 253.8 146 80.8
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.9e-65 251.5 141 82.3
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 6.7e-65 250.8 146 80.1
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 8.7e-65 250.4 147 80.3
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.3e-64 248.4 141 83.7
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 3.3e-64 248.4 143 79.7
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.2e-63 245.7 137 81.8
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 4.8e-63 244.6 146 78.8
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 6.3e-63 244.2 141 79.4
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 8.2e-63 243.8 144 79.2
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.1e-62 241.9 140 82.1
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 2.6e-61 238.8 144 77.8
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 4.5e-61 238.0 145 75.2
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 1.0e-60 236.9 143 78.3
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 3.8e-60 235.0 139 79.1
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 6.5e-60 234.2 139 79.1
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 8.5e-60 233.8 146 75.3
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.5e-59 232.3 143 75.5
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 3.2e-59 231.9 146 75.3
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 3.2e-59 231.9 139 77.7
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 3.2e-59 231.9 137 79.6
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 4.2e-59 231.5 146 75.3
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 5.5e-59 231.1 146 71.9
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.2e-58 229.9 140 75.7
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.6e-58 229.6 139 77.0
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.6e-58 228.4 146 77.4
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 6.1e-58 227.6 147 72.8
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 1.4e-57 226.5 146 72.6
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 3.9e-57 224.9 145 71.0
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 5.1e-57 224.6 145 71.7
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 6.7e-57 224.2 144 74.3
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 8.8e-57 223.8 148 70.3
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.9e-56 222.6 136 75.0
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 7.4e-56 220.7 144 71.5
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 9.7e-56 220.3 147 68.7
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 2.8e-55 218.8 144 71.5
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 3.7e-55 218.4 145 71.0
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.7e-55 218.4 146 70.5
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 6.3e-55 217.6 141 70.9
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 2.4e-54 215.7 146 70.5
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.4e-54 215.7 152 67.8
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 5.3e-54 214.5 137 74.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 2.0e-53 212.6 136 73.5
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 2.0e-53 212.6 145 67.6
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 4.5e-53 211.5 140 70.7
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 5.9e-53 211.1 139 70.5
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 5.9e-53 211.1 139 71.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 1.0e-52 210.3 132 73.5
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.7e-52 209.5 130 77.7
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 2.2e-52 209.1 144 69.4
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.2e-52 209.1 141 70.2
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 8.5e-52 207.2 129 76.7
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 1.4e-51 206.5 135 73.3
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.4e-51 206.5 129 76.7
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.4e-51 206.5 129 76.7
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.9e-51 206.1 137 69.3
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.9e-51 206.1 137 69.3
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 2.5e-51 205.7 143 65.7
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.5e-51 205.7 212 52.4
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 3.2e-51 205.3 131 73.3
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 3.2e-51 205.3 121 81.0
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 4.2e-51 204.9 131 73.3
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 9.4e-51 203.8 130 72.3
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 9.4e-51 203.8 143 65.7
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 9.4e-51 203.8 130 70.0
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 9.4e-51 203.8 137 68.6
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 9.4e-51 203.8 144 66.0
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 1.2e-50 203.4 131 71.0
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.2e-50 203.4 131 74.8
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 1.6e-50 203.0 144 64.6
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.6e-50 203.0 132 73.5
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.7e-50 202.2 132 71.2
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.7e-50 202.2 157 63.1
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 2.7e-50 202.2 130 71.5
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 3.6e-50 201.8 129 72.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 4.7e-50 201.4 131 72.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 4.7e-50 201.4 131 72.5
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 4.7e-50 201.4 131 72.5
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 6.1e-50 201.1 127 75.6
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 6.1e-50 201.1 130 71.5
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 7.9e-50 200.7 144 65.3
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 7.9e-50 200.7 144 65.3
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 2.3e-49 199.1 134 69.4
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 2.3e-49 199.1 134 69.4
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 2.3e-49 199.1 134 69.4
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 3.0e-49 198.7 146 65.1
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 5.1e-49 198.0 134 67.2
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 5.1e-49 198.0 129 70.5
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 6.7e-49 197.6 138 66.7
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 1.5e-48 196.4 132 68.2
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 1.5e-48 196.4 134 67.9
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.8e-47 192.2 132 67.4
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 4.8e-47 191.4 146 63.0
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.1e-46 190.3 146 61.6
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 5.3e-46 188.0 121 71.1
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.6e-45 185.7 151 59.6
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 4.5e-45 184.9 144 62.5
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.3e-44 183.3 127 68.5
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.9e-44 182.2 139 57.6
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.9e-44 182.2 139 57.6
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 3.8e-44 181.8 136 64.7
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.1e-42 176.0 121 66.9
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.7e-42 175.6 146 60.3
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.1e-40 170.2 141 54.6
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 6.3e-39 164.5 144 57.6
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 1.1e-38 163.7 112 67.9
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 2.4e-38 162.5 213 42.3
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 6.1e-34 147.9 131 55.0
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 1.5e-32 143.3 80 82.5
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 9.7e-32 140.6 130 53.1
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 2.8e-31 139.0 130 48.5
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 3.7e-31 138.7 130 47.7
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 4.8e-31 138.3 82 81.7
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 4.8e-31 138.3 130 48.5
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 3.1e-30 135.6 97 64.9
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.6e-29 133.3 144 45.1
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 2.7e-29 132.5 146 50.7
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 2.9e-28 129.0 117 50.4
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.5e-27 126.7 117 50.4
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 5.5e-27 124.8 117 49.6
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 1.6e-26 123.2 97 63.9
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.8e-25 119.8 106 51.9
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 8.8e-25 117.5 84 66.7
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 8.3e-23 110.9 95 53.7
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.4e-22 110.2 133 41.4
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.4e-22 109.4 145 40.7
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 4.1e-22 108.6 162 38.3
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.8e-20 102.1 134 38.1
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.9e-19 99.8 60 76.7
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 5.5e-19 98.2 87 56.3
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 7.2e-19 97.8 60 75.0
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 5.2e-17 91.7 144 33.3
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 2.0e-16 89.7 140 31.4
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 3.1e-14 82.4 75 53.3
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 5.4e-14 81.6 72 52.8
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 8.0e-10 67.8 109 35.8
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 2.2e-07 59.7 37 73.0


User provided reference genes

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