Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 0.0e+00 1167.9 611 100.0
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.5e-120 437.2 598 51.2
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 6.2e-119 432.6 609 49.8
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.5e-114 416.8 431 58.7
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.8e-110 404.4 723 42.6
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.3e-105 387.5 490 53.9
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 4.0e-102 376.7 496 50.2
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 9.0e-102 375.6 548 48.0
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 9.9e-101 372.1 398 57.8
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 7.1e-91 339.3 649 41.9
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 1.1e-86 325.5 643 41.1
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 9.0e-78 295.8 379 51.2
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 6.5e-76 289.7 533 44.1
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 3.1e-70 270.8 492 45.7
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.2e-69 268.9 349 50.7
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 8.5e-68 262.7 487 40.9
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 1.1e-67 262.3 305 50.8
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 1.9e-67 261.5 465 43.9
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 7.2e-67 259.6 427 44.7
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 6.1e-66 256.5 485 44.7
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 7.9e-66 256.1 328 52.1
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 2.3e-65 254.6 459 43.6
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 3.0e-65 254.2 448 42.4
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 3.9e-65 253.8 426 43.4
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 2.0e-64 251.5 472 41.3
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 4.3e-64 250.4 459 42.9
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 4.8e-63 246.9 498 40.6
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 1.8e-62 245.0 286 55.6
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 4.1e-62 243.8 365 48.2
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 3.4e-61 240.7 334 47.3
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 7.7e-61 239.6 384 48.7
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.2e-60 238.0 346 47.1
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 2.9e-60 237.7 487 41.5
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.4e-59 235.3 349 45.6
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.2e-59 233.0 346 46.2
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.2e-58 232.3 344 45.9
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.1e-58 229.9 346 46.8
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.1e-58 229.9 349 45.0
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 7.9e-58 229.6 317 45.4
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 1.0e-57 229.2 327 46.5
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 4.4e-56 223.8 447 40.0
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 1.8e-54 218.4 443 38.8
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 1.6e-53 215.3 467 38.5
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 4.5e-53 213.8 370 41.4
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 1.7e-52 211.8 546 37.0
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 2.9e-52 211.1 419 39.4
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 4.2e-51 207.2 343 42.0
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 7.2e-51 206.5 244 48.4
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 3.0e-49 201.1 370 39.7
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 4.4e-48 197.2 442 35.5
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.3e-47 195.7 326 42.6
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 6.3e-47 193.4 370 38.9
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 6.3e-47 193.4 264 45.8
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 2.4e-46 191.4 264 44.7
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 7.7e-45 186.4 496 36.3
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 1.9e-43 181.8 364 39.3
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.9e-43 181.8 254 43.3
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 1.2e-42 179.1 371 38.8
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.2e-42 179.1 364 37.4
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 2.1e-42 178.3 251 45.0
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 8.0e-42 176.4 245 44.9
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 8.0e-42 176.4 316 41.1
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.0e-41 174.5 371 36.1
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 3.4e-40 171.0 262 43.1
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 5.7e-40 170.2 262 41.2
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.2e-39 168.3 438 34.7
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 1.8e-38 165.2 356 35.4
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 3.1e-38 164.5 359 33.4
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 3.1e-38 164.5 359 34.0
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 5.4e-38 163.7 356 35.1
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 1.2e-37 162.5 234 42.3
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 5.9e-37 160.2 372 35.8
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 7.7e-37 159.8 387 34.4
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.7e-36 158.7 468 31.6
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 2.2e-36 158.3 418 34.2
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 2.5e-35 154.8 264 41.3
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 9.4e-35 152.9 485 35.1
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 2.1e-34 151.8 397 35.0
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 2.7e-34 151.4 234 41.0
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 2.7e-34 151.4 136 58.1
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 8.8e-33 146.4 466 31.1
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 1.3e-31 142.5 331 37.5
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.3e-31 140.2 312 34.6
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 6.3e-31 140.2 269 40.1
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.4e-30 139.0 435 32.4
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.4e-30 138.3 314 34.7
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 2.0e-29 135.2 359 35.9
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 2.3e-28 131.7 351 35.6
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 3.8e-28 131.0 360 33.9
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 5.0e-28 130.6 230 40.4
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.6e-28 130.2 360 33.6
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 1.5e-27 129.0 244 38.1
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 9.5e-27 126.3 417 32.4
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 4.7e-26 124.0 352 33.8
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 4.7e-26 124.0 375 29.6
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 3.0e-25 121.3 162 42.6
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 7.5e-24 116.7 408 31.4
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 9.8e-24 116.3 370 31.1
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 2.2e-23 115.2 279 33.3
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 4.9e-23 114.0 404 33.4
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 2.4e-22 111.7 222 35.6
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 7.0e-22 110.2 220 35.0
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 7.0e-22 110.2 212 36.3
Lj6C70T8 Lonicera japonica HOM05D006954 ORTHO05D008729 7.0e-22 110.2 128 58.6
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 2.0e-21 108.6 217 36.4
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 2.0e-21 108.6 217 36.4
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.7e-21 108.2 224 33.0
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 3.5e-21 107.8 345 32.2
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 4.3e-19 100.9 252 31.0
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 2.2e-15 88.6 213 38.5
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 1.1e-14 86.3 324 32.1
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 1.1e-14 86.3 455 28.8
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 1.2e-13 82.8 552 26.3
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 1.6e-13 82.4 453 27.4
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 1.7e-12 79.0 474 29.3
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.1e-11 76.3 217 30.4
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 4.3e-11 74.3 612 25.5
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 2.8e-10 71.6 190 30.0
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 8.1e-10 70.1 194 25.8
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 3.1e-09 68.2 221 24.4
Actinidia22764 Actinidia chinensis HOM05D006954 ORTHO05D008729 2.6e-08 65.1 144 38.9
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 3.4e-08 64.7 190 28.9
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 7.5e-08 63.5 194 26.3
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.8e-08 63.2 187 26.7
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.7e-07 62.4 193 26.9
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 2.9e-07 61.6 190 26.8
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 3.7e-07 61.2 192 29.2
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 4.9e-07 60.8 211 24.2
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.9e-07 60.8 238 26.1
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.9e-07 60.8 209 25.8
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 6.4e-07 60.5 248 24.6
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 8.3e-07 60.1 191 26.7
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 1.1e-06 59.7 70 44.3
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 1.1e-06 59.7 199 24.1
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 1.4e-06 59.3 204 25.5
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 1.9e-06 58.9 88 38.6
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.9e-06 58.9 190 24.7
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 1.9e-06 58.9 198 24.2
SHI20272 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-06 58.9 103 40.8
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 2.4e-06 58.5 191 26.2
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 2.4e-06 58.5 237 24.1
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 3.2e-06 58.2 190 24.7
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 4.1e-06 57.8 190 28.4
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 5.4e-06 57.4 190 25.8
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 5.4e-06 57.4 190 25.8
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 5.4e-06 57.4 190 24.2
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 7.1e-06 57.0 257 24.5
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 9.2e-06 56.6 226 23.9


User provided reference genes

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