Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 6.1e-222 773.9 395 100.0
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 3.3e-199 698.4 398 88.4
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 9.8e-196 686.8 386 90.2
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 6.4e-195 684.1 398 87.4
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 6.4e-195 684.1 398 87.4
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 5.4e-194 681.0 397 85.4
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 5.9e-193 677.6 397 85.1
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 2.5e-191 672.2 399 85.2
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.8e-189 666.0 393 85.0
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 1.3e-187 659.8 397 83.1
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.4e-186 655.6 397 83.9
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 3.2e-186 655.2 397 82.1
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 4.1e-186 654.8 397 82.9
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.7e-185 652.1 397 83.6
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 6.0e-185 651.0 398 81.7
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 2.3e-184 649.0 398 81.4
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 3.0e-184 648.7 398 81.2
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 6.6e-184 647.5 398 82.4
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 2.8e-182 642.1 396 80.8
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.8e-181 639.4 396 81.8
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 5.2e-181 637.9 396 82.1
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 8.9e-181 637.1 398 81.2
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 8.3e-179 630.6 419 77.1
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 1.1e-178 630.2 408 78.4
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 3.2e-178 628.6 399 81.7
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 1.2e-177 626.7 397 80.6
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 4.6e-177 624.8 401 79.8
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.7e-176 622.9 396 79.5
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.7e-176 622.9 396 79.8
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 2.3e-176 622.5 395 80.0
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.9e-176 621.7 396 79.8
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 6.6e-176 620.9 383 81.7
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.1e-175 620.2 396 79.8
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.5e-175 619.0 396 79.5
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.3e-175 618.2 396 79.0
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 3.1e-173 612.1 395 78.5
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 5.2e-173 611.3 402 75.9
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 6.8e-173 610.9 395 77.0
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 8.9e-173 610.5 400 77.0
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.5e-172 609.8 402 76.6
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 2.0e-172 609.4 398 77.1
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 4.4e-172 608.2 395 76.7
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 7.6e-172 607.4 397 77.6
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.3e-171 606.7 399 77.9
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.4e-170 603.2 408 76.2
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 4.1e-170 601.7 397 76.1
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.1e-170 601.7 397 76.1
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 4.1e-170 601.7 401 74.8
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 5.4e-170 601.3 406 74.6
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 9.2e-170 600.5 399 74.9
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.6e-169 599.7 397 75.8
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 4.6e-169 598.2 397 76.6
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.0e-168 597.0 395 75.7
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.0e-168 597.0 405 76.3
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 1.3e-168 596.7 397 76.6
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.0e-168 595.5 402 75.1
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 3.0e-168 595.5 405 76.0
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 6.6e-168 594.3 406 73.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.1e-167 593.6 399 76.2
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 2.8e-166 589.0 365 82.2
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.1e-165 587.0 402 75.6
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.4e-165 586.6 402 74.6
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.5e-164 583.2 396 75.3
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.0e-164 582.8 398 75.1
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 7.6e-164 580.9 396 75.5
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 1.7e-163 579.7 396 74.7
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 2.2e-163 579.3 396 74.2
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 2.4e-162 575.9 401 74.6
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 5.4e-162 574.7 407 72.2
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 7.1e-162 574.3 398 74.1
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 1.2e-161 573.5 405 71.1
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.2e-161 573.5 401 74.8
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.6e-161 573.2 406 71.9
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 2.7e-161 572.4 370 75.7
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 3.5e-161 572.0 408 72.1
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 7.8e-161 570.9 406 73.2
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.0e-160 570.5 408 71.3
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 5.1e-160 568.2 398 73.6
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 8.7e-160 567.4 365 78.4
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 1.1e-159 567.0 367 79.0
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 2.5e-159 565.8 406 71.7
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 2.5e-159 565.8 398 73.4
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 3.3e-159 565.5 362 77.1
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 3.3e-159 565.5 409 70.9
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 3.3e-159 565.5 509 61.7
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 5.6e-159 564.7 411 70.3
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 9.6e-159 563.9 406 70.4
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 9.6e-159 563.9 409 70.7
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 1.3e-158 563.5 401 73.1
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 9.0e-157 557.4 387 74.2
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 4.5e-156 555.1 429 67.4
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.3e-152 543.5 395 70.9
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 5.1e-152 541.6 400 71.2
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 4.3e-151 538.5 400 71.2
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.1e-150 536.2 363 75.5
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 1.1e-143 513.8 306 81.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 6.2e-142 508.1 396 64.6
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 8.2e-142 507.7 306 81.0
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 2.1e-137 493.0 283 83.7
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.8e-136 490.0 361 67.6
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 8.7e-136 487.6 444 61.0
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 2.4e-133 479.6 345 67.0
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 8.5e-131 471.1 372 65.3
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 3.8e-107 392.5 337 57.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 3.3e-82 309.7 245 67.3
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 2.1e-81 307.0 316 57.0
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 9.8e-79 298.1 278 59.7
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.8e-72 277.3 160 82.5
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 2.3e-72 276.9 236 59.3
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.1e-69 268.1 211 67.8
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 4.7e-65 252.7 203 60.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 5.8e-63 245.7 225 59.6
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 5.4e-61 239.2 260 54.2
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 7.3e-58 228.8 234 54.3
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 3.0e-51 206.8 168 67.3
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.8e-49 200.3 205 54.6
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.9e-45 187.6 110 80.0
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 4.2e-45 186.4 110 80.9
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 1.5e-42 177.9 134 67.9
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 9.6e-42 175.3 100 83.0
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.6e-39 167.2 110 73.6
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.3e-38 164.9 374 32.4
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.8e-38 163.3 143 63.6
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.9e-37 161.0 347 31.7
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 4.2e-37 159.8 287 33.8
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 5.3e-32 142.9 285 31.9
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.8e-31 139.4 166 48.8
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.6e-31 139.0 166 48.8
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.5e-23 114.8 258 30.6
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 1.7e-22 111.3 209 31.6
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 1.0e-19 102.1 78 65.4
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 3.0e-19 100.5 62 75.8
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.5e-18 98.2 82 65.9
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 1.9e-18 97.8 65 72.3
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 7.4e-18 95.9 130 43.1
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 9.7e-18 95.5 49 89.8
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 6.3e-17 92.8 51 82.4
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 6.3e-17 92.8 69 65.2
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.4e-16 90.9 60 71.7
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 4.5e-15 86.7 80 60.0
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 4.5e-15 86.7 80 60.0
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 4.5e-15 86.7 51 84.3
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 5.9e-15 86.3 50 86.0
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.7e-14 84.7 51 70.6
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.2e-14 84.3 85 52.9
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 2.2e-14 84.3 214 29.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.5e-13 79.7 53 71.7
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 7.2e-13 79.3 55 69.1
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.6e-12 78.2 52 71.2
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-10 72.0 90 45.6
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 2.5e-10 70.9 70 57.1
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 9.7e-10 68.9 48 68.8
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 9.7e-10 68.9 48 68.8
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 6.3e-09 66.2 40 82.5
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 3.8e-06 57.0 78 44.9


User provided reference genes

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