Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 4.1e-136 488.0 241 100.0
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 1.7e-81 306.6 174 89.1
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 5.4e-72 275.0 175 77.1
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.9e-69 266.5 175 77.7
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.4e-64 250.4 169 75.7
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 6.0e-63 245.0 175 69.7
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 7.9e-63 244.6 175 70.3
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 5.1e-62 241.9 175 70.3
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 1.5e-61 240.4 174 71.3
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 1.9e-61 240.0 175 69.7
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.9e-61 240.0 175 66.9
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 4.3e-61 238.8 175 73.1
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 1.6e-60 236.9 176 68.2
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 4.8e-60 235.3 176 69.9
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 1.1e-59 234.2 177 65.5
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 3.1e-59 232.6 168 69.0
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 5.8e-58 228.4 177 65.5
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 7.6e-58 228.0 175 63.4
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 7.6e-58 228.0 177 64.4
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 1.7e-57 226.9 174 66.7
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 1.4e-56 223.8 175 66.9
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 4.2e-56 222.2 175 65.7
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 9.3e-56 221.1 176 61.9
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 1.2e-55 220.7 175 62.3
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 1.2e-55 220.7 176 67.6
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.1e-55 219.9 175 62.9
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 4.6e-55 218.8 176 64.8
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 6.0e-55 218.4 176 65.3
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 7.9e-55 218.0 174 65.5
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 7.9e-55 218.0 173 64.7
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 7.9e-55 218.0 177 62.7
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 3.0e-54 216.1 176 64.2
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 6.7e-54 214.9 167 63.5
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 8.7e-54 214.5 180 64.4
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.9e-53 213.4 175 66.3
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 2.5e-53 213.0 176 63.1
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 3.3e-53 212.6 180 63.9
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 7.4e-53 211.5 174 62.6
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 9.6e-53 211.1 175 64.0
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 9.6e-53 211.1 175 65.1
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 1.3e-52 210.7 176 62.5
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.3e-52 210.7 176 61.9
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.3e-52 210.7 176 62.5
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 1.3e-52 210.7 176 61.9
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 4.8e-52 208.8 177 58.2
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.4e-51 207.2 175 58.3
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.8e-51 206.8 176 61.9
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 5.3e-51 205.3 175 64.0
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 5.3e-51 205.3 175 64.0
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 3.4e-50 202.6 177 56.5
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 5.8e-50 201.8 170 59.4
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.0e-49 201.1 176 61.4
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 1.3e-49 200.7 176 59.7
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 3.8e-49 199.1 175 61.1
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 6.5e-49 198.4 176 60.2
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 3.2e-48 196.1 170 58.2
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 5.5e-48 195.3 177 55.4
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 5.5e-48 195.3 174 59.2
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 1.2e-47 194.1 176 59.7
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 3.5e-47 192.6 178 59.6
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 3.5e-47 192.6 174 60.3
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 6.0e-47 191.8 177 58.8
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 7.9e-47 191.4 169 56.8
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 7.9e-47 191.4 175 57.7
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.0e-46 191.0 178 55.6
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 1.3e-46 190.7 174 58.6
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 3.9e-46 189.1 173 56.6
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 5.1e-46 188.7 173 56.6
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 5.1e-46 188.7 176 54.5
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 6.7e-46 188.3 173 59.5
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.1e-45 187.6 175 57.1
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.1e-45 187.6 175 57.1
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 1.5e-45 187.2 185 57.8
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 4.3e-45 185.7 175 58.9
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 1.3e-44 184.1 175 54.9
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 3.7e-44 182.6 168 56.5
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 4.8e-44 182.2 171 55.0
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.8e-43 180.3 171 57.9
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.8e-43 180.3 171 53.8
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.4e-43 179.9 178 53.4
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 2.4e-43 179.9 175 55.4
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 4.1e-43 179.1 181 57.5
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 5.3e-43 178.7 176 56.8
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 9.0e-43 177.9 177 54.2
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 2.0e-42 176.8 171 56.7
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 2.0e-42 176.8 171 56.7
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 3.4e-42 176.0 171 56.7
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 3.4e-42 176.0 173 59.0
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 7.6e-42 174.9 168 55.4
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 2.9e-41 172.9 171 56.1
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 8.5e-41 171.4 177 54.2
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 1.1e-40 171.0 173 56.6
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 3.2e-40 169.5 175 54.3
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 6.1e-39 165.2 176 48.3
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 1.3e-38 164.1 172 53.5
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 5.1e-38 162.2 172 54.1
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 8.7e-38 161.4 172 53.5
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.5e-37 160.6 150 55.3
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.5e-37 160.6 111 67.6
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 2.2e-36 156.8 177 49.7
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 3.7e-36 156.0 183 49.7
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 4.8e-36 155.6 172 52.3
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 8.2e-36 154.8 177 48.6
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 3.1e-35 152.9 177 48.0
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 4.1e-35 152.5 177 49.2
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 6.9e-35 151.8 175 46.9
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 7.7e-34 148.3 175 49.7
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 2.9e-33 146.4 173 49.7
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 3.8e-33 146.0 114 65.8
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 8.5e-33 144.8 175 45.1
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 8.5e-33 144.8 176 50.0
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 4.2e-32 142.5 181 49.2
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 4.2e-32 142.5 175 45.7
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 7.2e-32 141.7 175 45.1
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 1.2e-31 141.0 175 46.3
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 1.2e-31 141.0 175 46.3
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 1.6e-31 140.6 182 47.3
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 3.6e-31 139.4 175 45.1
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 4.6e-31 139.0 176 45.5
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 2.3e-30 136.7 184 45.7
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 2.0e-29 133.7 173 41.6
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 3.3e-29 132.9 176 43.8
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 2.4e-27 126.7 176 43.2
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 2.4e-27 126.7 176 43.2
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 3.1e-27 126.3 176 43.2
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 3.1e-27 126.3 176 43.2
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 3.1e-27 126.3 176 43.2
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 2.6e-26 123.2 111 55.9
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 1.9e-24 117.1 179 43.0
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 6.5e-17 92.0 190 32.1
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.2e-13 81.3 182 31.3
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 1.4e-11 74.3 117 36.8
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.6e-10 70.9 190 27.9


User provided reference genes

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