Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 4.5e-167 591.3 314 100.0
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 3.7e-121 438.7 322 76.4
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 3.1e-120 435.6 318 74.8
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.6e-111 406.8 318 71.1
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.7e-111 406.0 319 70.2
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 4.7e-108 395.2 321 71.3
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.2e-103 380.6 317 69.7
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 2.7e-103 379.4 319 66.8
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.1e-101 374.0 319 65.5
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.1e-100 369.8 321 64.8
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.6e-100 369.0 323 65.3
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 2.0e-95 353.2 318 62.6
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 2.3e-94 349.7 313 65.2
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 7.3e-93 344.7 319 62.1
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.2e-92 344.0 319 61.8
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.2e-92 344.0 319 61.8
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 4.7e-92 342.0 319 61.4
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 1.8e-91 340.1 315 63.2
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 5.2e-91 338.6 330 61.2
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 6.8e-91 338.2 326 62.6
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 9.8e-90 334.3 336 61.3
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.7e-89 333.6 321 61.1
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 2.9e-89 332.8 311 63.3
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 2.4e-88 329.7 311 64.3
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 1.6e-87 327.0 313 61.7
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.3e-85 319.3 335 55.2
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.3e-85 319.3 335 55.2
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.2e-84 317.4 313 59.4
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 2.8e-84 316.2 298 61.7
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 2.8e-84 316.2 316 58.9
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 3.6e-84 315.8 301 58.8
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.3e-83 313.2 314 61.1
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.0e-83 312.4 295 58.6
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 8.9e-83 311.2 316 58.5
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.5e-82 310.5 300 60.7
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 1.5e-82 310.5 314 60.8
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.6e-82 309.7 308 61.0
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.4e-82 308.9 314 60.8
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 9.8e-82 307.8 321 56.1
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 8.3e-81 304.7 320 56.2
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.4e-80 303.9 293 57.7
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.4e-80 303.1 321 55.8
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 9.2e-80 301.2 314 60.5
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.2e-79 300.8 341 56.3
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.1e-79 300.1 308 57.1
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 2.7e-79 299.7 315 58.4
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 6.0e-79 298.5 304 58.9
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 1.7e-78 297.0 299 59.9
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.6e-76 290.4 300 59.3
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.1e-75 287.7 323 54.2
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 6.8e-75 285.0 304 56.2
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 1.2e-74 284.3 305 55.4
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 7.6e-74 281.6 300 55.0
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 2.9e-73 279.6 295 56.3
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 4.9e-73 278.9 295 53.9
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 4.9e-73 278.9 289 55.7
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 4.9e-73 278.9 298 54.4
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 5.4e-72 275.4 296 55.1
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 2.1e-71 273.5 298 57.7
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 7.8e-71 271.6 298 55.0
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.0e-70 271.2 330 51.5
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.3e-70 270.8 299 56.2
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 2.3e-70 270.0 309 53.4
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 2.3e-70 270.0 301 54.8
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 2.3e-70 270.0 298 53.0
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 3.9e-70 269.2 296 55.4
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 3.9e-70 269.2 298 55.7
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.5e-69 267.3 297 53.5
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.5e-69 267.3 308 51.6
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 7.3e-69 265.0 301 53.8
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.2e-68 264.2 303 53.5
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.2e-68 264.2 300 55.7
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.2e-68 264.2 298 54.4
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.6e-68 263.8 283 57.6
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 4.7e-68 262.3 250 58.0
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.1e-67 261.2 334 50.6
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 5.2e-67 258.8 298 52.7
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 6.8e-67 258.5 290 53.1
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 6.8e-67 258.5 294 56.1
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 6.8e-67 258.5 293 56.0
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 8.9e-67 258.1 307 50.8
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 1.5e-66 257.3 307 50.2
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.5e-66 257.3 293 53.6
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.0e-66 256.9 294 55.8
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 2.6e-66 256.5 308 50.6
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 3.4e-66 256.1 310 51.6
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.2e-65 253.4 309 52.1
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.2e-65 253.4 265 55.1
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 3.8e-65 252.7 302 51.0
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.1e-64 251.1 298 52.7
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.4e-64 250.8 309 50.2
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 3.2e-64 249.6 305 50.5
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 5.4e-64 248.8 297 52.5
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.6e-63 247.3 309 51.5
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 2.1e-63 246.9 314 51.6
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.0e-62 243.0 305 49.5
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 5.1e-62 242.3 300 50.3
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 6.6e-62 241.9 308 49.7
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 1.5e-61 240.7 268 57.5
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.5e-61 240.7 288 49.7
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 3.3e-61 239.6 309 48.9
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.3e-60 237.7 304 49.0
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 2.1e-60 236.9 308 48.7
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 2.1e-60 236.9 198 67.2
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.1e-59 234.6 311 49.2
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 1.1e-59 234.6 307 51.5
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 1.4e-59 234.2 309 49.2
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 4.0e-59 232.6 311 47.6
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 9.0e-59 231.5 308 48.4
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 9.0e-59 231.5 308 48.4
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 7.6e-58 228.4 304 50.7
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 9.9e-58 228.0 275 48.7
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.4e-56 224.2 300 48.0
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.9e-56 223.8 300 48.0
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 4.2e-56 222.6 308 49.4
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 1.6e-55 220.7 312 46.8
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 3.1e-51 206.5 286 46.2
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 7.4e-45 185.3 285 42.1
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 9.6e-45 184.9 285 42.1
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 5.1e-38 162.5 143 65.0
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 3.1e-35 153.3 301 37.9
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 3.1e-35 153.3 161 55.9
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 8.5e-33 145.2 175 52.0
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.1e-32 144.8 279 39.1
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 2.6e-26 123.6 119 61.3
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 4.5e-18 96.3 117 51.3
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 4.2e-16 89.7 196 35.7
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.2e-12 77.4 163 39.3
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 1.0e-09 68.6 125 40.0
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 6.1e-07 59.3 95 43.2


User provided reference genes

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