Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 5.0e-129 464.5 248 100.0
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.7e-103 379.0 243 78.6
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.4e-102 376.7 247 77.3
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.4e-102 376.7 247 79.8
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.3e-102 375.9 247 76.5
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.8e-101 370.5 199 91.0
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 2.2e-100 369.4 197 92.4
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.2e-100 369.4 199 91.0
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.8e-100 368.2 199 90.5
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 6.3e-100 367.9 247 76.9
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 6.3e-100 367.9 202 88.6
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 8.3e-100 367.5 199 89.9
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 2.4e-99 365.9 248 75.0
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 7.0e-99 364.4 190 93.2
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 7.0e-99 364.4 202 87.6
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 9.1e-99 364.0 199 89.9
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 9.1e-99 364.0 249 76.7
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 1.6e-98 363.2 199 88.4
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 4.5e-98 361.7 196 89.3
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 7.7e-98 360.9 249 75.9
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.7e-98 360.9 199 88.9
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 7.7e-98 360.9 206 87.9
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 1.0e-97 360.5 250 72.4
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.0e-97 360.5 196 89.3
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 1.3e-97 360.1 244 75.8
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.7e-97 359.8 198 87.4
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 2.3e-97 359.4 198 88.4
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.9e-97 359.0 248 74.2
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 3.8e-97 358.6 196 88.8
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 3.8e-97 358.6 199 87.4
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 6.6e-97 357.8 195 89.2
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.9e-96 356.3 247 73.7
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.9e-96 356.3 243 76.1
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.9e-96 356.3 198 88.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.5e-96 355.9 200 86.0
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.5e-96 355.9 200 85.5
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 3.3e-96 355.5 250 73.2
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 4.2e-96 355.1 199 85.4
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 5.5e-96 354.8 199 86.4
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 7.2e-96 354.4 189 91.5
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 7.2e-96 354.4 197 87.8
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 9.5e-96 354.0 199 84.9
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.2e-95 353.6 198 86.4
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.6e-95 353.2 203 87.2
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 1.6e-95 353.2 199 84.4
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.6e-95 353.2 199 84.4
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.6e-95 353.2 198 86.4
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.6e-95 353.2 236 79.7
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.1e-95 352.8 198 86.4
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 2.8e-95 352.4 199 83.9
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.8e-95 352.4 199 84.4
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 3.6e-95 352.1 199 83.9
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 6.1e-95 351.3 198 86.9
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 8.0e-95 350.9 199 83.9
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.0e-94 350.5 190 88.9
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.4e-94 350.1 199 84.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.8e-94 349.7 199 84.4
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 3.0e-94 349.0 190 88.4
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 4.0e-94 348.6 202 82.7
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 4.0e-94 348.6 186 91.9
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 5.2e-94 348.2 244 72.5
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 5.2e-94 348.2 242 73.6
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.2e-93 347.1 199 83.9
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 2.6e-93 345.9 199 82.9
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 2.6e-93 345.9 199 82.9
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 3.4e-93 345.5 199 82.9
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.7e-92 343.2 243 72.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.2e-92 342.8 199 82.4
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.2e-92 342.8 199 82.4
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.9e-92 341.7 199 85.9
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 1.1e-91 340.5 199 82.4
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.1e-91 340.5 242 71.5
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.8e-91 339.7 244 71.3
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 5.4e-91 338.2 198 83.3
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 5.4e-91 338.2 178 92.1
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.6e-90 336.7 197 82.2
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 2.0e-90 336.3 199 80.9
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 2.7e-90 335.9 202 82.2
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 2.7e-90 335.9 189 85.7
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 3.5e-90 335.5 198 81.3
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 3.5e-90 335.5 202 82.2
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 3.5e-90 335.5 199 81.9
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 4.5e-90 335.1 202 80.7
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 5.9e-90 334.7 199 81.4
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 1.0e-89 334.0 199 81.4
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.9e-89 332.4 178 89.9
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.9e-89 332.4 178 89.9
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.9e-89 332.4 199 80.4
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 8.6e-89 330.9 202 79.7
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.5e-88 330.1 211 78.7
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 1.5e-88 330.1 198 80.8
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.5e-88 329.3 196 83.7
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.3e-88 328.6 198 80.3
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 9.5e-88 327.4 198 79.8
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.2e-87 327.0 187 84.0
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 2.1e-87 326.2 202 78.2
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.7e-87 325.1 173 87.9
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 4.4e-85 318.5 178 85.4
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 4.9e-84 315.1 199 78.4
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 5.4e-83 311.6 198 78.3
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 9.2e-83 310.8 185 82.2
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 6.2e-79 298.1 200 77.0
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.2e-77 293.9 198 75.3
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 3.7e-76 288.9 201 70.6
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.9e-72 276.6 200 67.5
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 7.3e-72 274.6 194 69.1
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.1e-71 273.1 240 58.3
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.1e-70 270.8 203 65.5
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 3.1e-70 269.2 203 64.0
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 6.8e-70 268.1 196 66.8
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.4e-62 243.0 138 82.6
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.0e-61 240.0 197 59.9
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 9.2e-59 231.1 177 62.1
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.3e-57 227.3 199 58.8
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 2.3e-57 226.5 125 88.8
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 3.0e-57 226.1 126 87.3
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.2e-55 220.7 127 85.0
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.4e-54 217.2 127 83.5
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 5.8e-53 211.8 123 83.7
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 2.2e-44 183.3 103 83.5
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.9e-44 183.0 196 52.6
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 9.6e-40 167.9 125 64.0
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.1e-32 144.4 75 90.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.2e-27 125.9 194 39.2
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 3.7e-23 112.8 65 76.9
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 6.9e-22 108.6 65 76.9
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 3.0e-17 93.2 104 57.7
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 8.8e-17 91.7 223 28.3
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.0e-16 90.5 60 75.0
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.7e-15 87.4 203 34.0


User provided reference genes

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