Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.8e-100 369.4 207 100.0
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 2.2e-77 292.7 211 75.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.0e-71 272.3 213 70.0
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 3.9e-71 271.9 212 75.0
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.5e-70 270.0 209 67.5
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.5e-70 270.0 203 69.5
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.4e-70 268.5 227 75.3
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.3e-69 266.9 204 68.6
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.7e-69 266.5 208 70.2
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.2e-69 266.2 210 68.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 3.7e-69 265.4 199 70.4
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 3.7e-69 265.4 209 68.9
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 4.8e-69 265.0 210 67.6
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.8e-69 265.0 243 67.9
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.1e-68 263.8 208 65.9
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.4e-68 263.5 209 67.9
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 1.8e-68 263.1 211 69.2
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 2.4e-68 262.7 206 66.0
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 3.1e-68 262.3 204 66.2
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.1e-68 262.3 224 68.3
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 7.0e-68 261.2 207 66.2
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.2e-67 260.4 203 67.0
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 1.6e-67 260.0 203 67.5
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 5.9e-67 258.1 212 67.9
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 5.9e-67 258.1 214 68.7
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 1.0e-66 257.3 209 64.6
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.0e-66 257.3 207 74.4
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.3e-66 256.9 201 70.6
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 2.2e-66 256.1 211 66.4
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 2.2e-66 256.1 202 69.8
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.2e-66 256.1 213 64.8
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.2e-66 256.1 209 65.6
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 8.5e-66 254.2 194 67.5
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.5e-65 252.7 207 65.7
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 2.5e-65 252.7 207 65.7
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 3.2e-65 252.3 225 63.1
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.2e-65 251.9 206 65.0
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 7.2e-65 251.1 207 65.2
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 9.4e-65 250.8 213 64.3
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 9.4e-65 250.8 191 67.5
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 1.2e-64 250.4 208 65.9
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.6e-64 250.0 208 65.4
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 1.6e-64 250.0 207 64.7
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 2.1e-64 249.6 207 66.7
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 2.7e-64 249.2 196 67.3
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.7e-64 249.2 210 64.8
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 3.6e-64 248.8 201 67.7
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 6.1e-64 248.1 208 67.8
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 8.0e-64 247.7 205 70.7
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 8.0e-64 247.7 212 68.9
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.3e-63 246.1 206 65.0
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 4.0e-63 245.4 210 64.8
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 4.0e-63 245.4 191 69.1
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 4.0e-63 245.4 205 64.4
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 6.7e-63 244.6 203 64.0
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 6.7e-63 244.6 195 66.7
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 8.8e-63 244.2 203 64.5
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.2e-62 243.8 208 67.3
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.6e-62 242.7 199 65.8
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 2.6e-62 242.7 208 63.0
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 3.3e-62 242.3 204 64.7
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 3.3e-62 242.3 204 64.7
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 4.4e-62 241.9 171 72.5
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 5.7e-62 241.5 212 63.7
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 5.7e-62 241.5 216 62.5
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 7.5e-62 241.1 211 63.0
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.3e-61 240.4 204 64.2
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.3e-61 240.4 201 65.7
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.7e-61 240.0 212 62.3
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 1.7e-61 240.0 204 64.2
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 1.7e-61 240.0 204 64.2
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.7e-61 240.0 208 64.9
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.7e-61 240.0 203 63.1
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 2.2e-61 239.6 200 65.5
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 2.8e-61 239.2 216 62.0
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.8e-61 239.2 216 62.0
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 3.7e-61 238.8 208 69.7
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 4.8e-61 238.4 229 57.2
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 4.8e-61 238.4 208 63.0
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.8e-61 238.4 202 63.9
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.8e-61 238.4 183 68.9
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 2.4e-60 236.1 209 62.2
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 3.1e-60 235.7 196 61.2
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 4.1e-60 235.3 217 61.3
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 4.1e-60 235.3 217 61.3
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 7.0e-60 234.6 205 62.4
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.2e-59 233.8 204 64.7
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.6e-59 233.4 193 65.8
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 2.0e-59 233.0 193 64.8
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 7.7e-59 231.1 197 66.0
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 3.8e-58 228.8 174 70.1
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 5.0e-58 228.4 249 54.6
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 5.0e-58 228.4 189 63.0
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 8.5e-58 227.6 191 64.4
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.1e-57 227.3 195 63.1
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 4.2e-57 225.3 209 63.2
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 5.5e-57 224.9 176 66.5
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 3.6e-56 222.2 138 82.6
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 3.6e-56 222.2 138 81.9
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 3.6e-56 222.2 176 65.3
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 1.0e-55 220.7 139 80.6
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.0e-55 220.7 210 62.4
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 4.0e-55 218.8 138 79.7
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 5.2e-55 218.4 175 68.0
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 1.2e-54 217.2 188 63.3
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 4.4e-54 215.3 139 78.4
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 2.8e-53 212.6 137 77.4
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 4.8e-53 211.8 178 66.9
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 6.3e-53 211.5 194 63.9
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.1e-52 210.7 169 66.3
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.8e-52 209.9 178 68.0
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 3.1e-52 209.1 203 58.6
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 9.1e-52 207.6 140 78.6
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 5.9e-51 204.9 128 80.5
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.6e-48 196.8 207 54.6
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 2.1e-48 196.4 207 54.6
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 8.9e-47 191.0 205 53.2
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 2.6e-46 189.5 205 54.6
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 9.8e-46 187.6 128 75.0
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 9.2e-44 181.0 138 68.1
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 1.7e-42 176.8 132 67.4
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 6.6e-42 174.9 132 70.5
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 8.6e-42 174.5 209 52.6
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 8.6e-42 174.5 133 65.4
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.5e-41 171.0 136 66.2
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 5.2e-39 165.2 136 64.0
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.7e-37 159.1 212 50.0
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 9.5e-33 144.4 211 47.9
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.4e-31 140.6 129 74.4
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.8e-31 140.2 117 62.4
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 1.5e-30 137.1 134 56.7
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 7.5e-30 134.8 135 56.3
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 5.2e-23 112.1 73 80.8
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 2.9e-21 106.3 63 81.0
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 2.9e-21 106.3 63 81.0
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.9e-21 105.5 70 80.0
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 5.6e-17 92.0 77 63.6
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 7.1e-12 75.1 139 44.6
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 3.0e-10 69.7 45 77.8


User provided reference genes

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