Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 0.0e+00 1279.2 620 100.0
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.5e-288 995.7 618 77.5
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.7e-277 958.4 618 74.8
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 8.3e-274 946.8 619 74.0
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 7.7e-272 940.3 619 73.2
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 3.8e-271 937.9 620 73.2
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 9.8e-267 923.3 621 72.0
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 1.4e-265 919.5 619 71.7
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 6.6e-263 910.6 619 71.6
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 4.7e-261 904.4 620 70.3
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 6.1e-261 904.0 619 71.4
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.0e-260 903.3 621 69.9
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.4e-260 902.9 619 70.4
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 1.2e-259 899.8 620 70.3
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.8e-257 892.5 621 69.9
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 2.4e-257 892.1 622 68.8
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 5.4e-257 891.0 621 69.7
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.7e-255 885.9 620 68.5
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 8.6e-255 883.6 621 68.8
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.3e-254 881.7 620 70.8
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.2e-253 879.8 622 68.6
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.6e-253 879.4 620 68.4
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 8.0e-253 877.1 620 68.7
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 2.6e-251 872.1 619 70.4
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 9.8e-251 870.2 619 67.0
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.3e-250 869.8 620 68.2
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 3.2e-249 865.1 620 67.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 4.1e-249 864.8 620 66.8
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 2.0e-248 862.4 618 66.3
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 1.3e-247 859.8 620 66.5
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 8.6e-247 857.1 619 67.2
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 4.3e-246 854.7 620 66.8
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 4.3e-246 854.7 620 67.1
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 4.3e-246 854.7 619 70.0
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.1e-244 850.1 604 68.0
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.8e-244 849.4 619 65.4
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 1.1e-241 840.1 621 66.0
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.1e-241 840.1 620 65.3
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 3.2e-241 838.6 618 67.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 6.0e-240 834.3 618 64.9
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.7e-239 832.8 619 65.3
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 2.3e-239 832.4 621 64.3
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 3.0e-239 832.0 623 65.3
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 5.6e-238 827.8 619 64.3
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 7.3e-238 827.4 620 65.0
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 9.5e-238 827.0 621 64.4
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.2e-237 826.6 624 64.6
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 1.6e-237 826.2 620 64.0
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 3.6e-237 825.1 619 63.0
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 4.0e-236 821.6 621 64.6
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 5.2e-236 821.2 619 63.0
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 2.0e-235 819.3 620 64.4
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 3.4e-235 818.5 619 64.0
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 8.3e-234 813.9 619 64.0
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 4.1e-233 811.6 609 65.5
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 2.1e-232 809.3 532 72.0
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 3.5e-232 808.5 619 63.7
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 1.0e-231 807.0 618 63.3
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 3.3e-230 802.0 622 62.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 4.0e-228 795.0 622 62.2
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 8.9e-228 793.9 596 63.3
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 1.2e-227 793.5 620 62.3
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 7.6e-227 790.8 618 61.2
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.3e-226 790.0 618 61.0
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 8.4e-226 787.3 619 62.2
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.9e-225 786.2 639 60.4
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 4.6e-224 781.6 621 61.7
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 7.8e-224 780.8 620 61.9
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.3e-223 780.0 621 62.5
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 1.3e-223 780.0 617 61.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 6.6e-223 777.7 623 61.6
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.5e-222 776.5 621 61.5
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 5.6e-222 774.6 619 61.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.8e-221 772.3 621 61.0
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.4e-220 770.0 621 60.5
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 4.0e-220 768.5 621 60.9
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 6.9e-220 767.7 592 64.5
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 4.9e-218 761.5 623 60.4
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.4e-217 760.0 624 59.6
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.2e-216 756.9 621 59.6
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 2.1e-216 756.1 618 60.2
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 2.4e-212 742.7 621 58.6
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 6.9e-212 741.1 623 58.4
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.2e-211 740.3 623 58.1
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 9.9e-211 737.3 621 58.1
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.5e-206 722.6 510 67.8
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.6e-200 703.4 563 64.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 5.1e-199 698.4 620 57.1
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 3.1e-196 689.1 631 55.3
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 3.1e-188 662.5 631 52.6
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.5e-187 660.2 630 52.9
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 2.9e-186 656.0 630 51.0
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 3.0e-183 646.0 526 58.6
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.4e-175 620.5 518 59.3
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 3.9e-175 619.0 619 52.3
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.2e-170 603.2 633 48.0
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.5e-170 601.7 619 51.9
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.2e-158 564.3 427 64.2
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.6e-142 510.0 421 60.8
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 6.8e-135 485.3 347 67.4
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 6.2e-128 462.2 452 53.1
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.4e-127 461.1 314 70.7
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 4.9e-125 452.6 636 40.6
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 2.3e-114 417.2 578 41.3
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.2e-112 411.4 645 36.0
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.8e-111 407.5 593 40.3
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.6e-107 394.4 560 37.5
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.1e-105 388.3 637 36.6
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 5.4e-100 369.4 308 60.1
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.3e-98 364.8 620 36.1
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.1e-92 345.1 600 36.2
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.4e-92 344.7 335 54.9
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 7.9e-91 339.0 285 60.7
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 3.0e-66 257.3 458 33.2
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 2.0e-65 254.6 190 64.7
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 6.5e-61 239.6 176 64.8
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.6e-59 235.0 322 41.0
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 3.7e-56 223.8 166 63.3
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.4e-39 168.7 487 29.4
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 4.5e-38 163.7 95 81.1
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 5.9e-38 163.3 95 81.1
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 9.8e-25 119.4 88 64.8
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.4e-23 115.5 75 70.7
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 1.8e-23 115.2 88 54.5
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.8e-22 109.8 79 60.8
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.3e-21 108.2 79 59.5
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 3.6e-19 100.9 94 45.7
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 5.0e-13 80.5 104 47.1
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.6e-11 75.5 366 22.7
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 7.1e-07 60.1 47 59.6
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 7.1e-07 60.1 136 32.4


User provided reference genes

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