Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21340 Davidia involucrata HOM05D002972 ORTHO05D002272 1.8e-243 845.5 424 100.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.2e-11 72.8 204 30.9
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.2e-10 72.0 204 30.9
Gohir.A03G205300 Gossypium hirsutum HOM05D002972 ORTHO05D002272 1.2e-10 72.0 128 31.2
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 1.6e-10 71.6 190 30.0
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 1.6e-10 71.6 233 26.2
FvH4_2g15450 Fragaria vesca HOM05D002972 ORTHO05D002272 2.1e-10 71.2 204 30.4
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 2.7e-10 70.9 147 29.3
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 4.7e-10 70.1 212 27.8
Gohir.D02G226600 Gossypium hirsutum HOM05D002972 ORTHO05D002272 4.7e-10 70.1 116 31.0
Gorai.005G254500 Gossypium raimondii HOM05D002972 ORTHO05D002272 4.7e-10 70.1 116 31.0
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.0e-10 69.3 204 29.9
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 8.0e-10 69.3 212 27.8
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 8.0e-10 69.3 218 28.9
Manes.01G145200 Manihot esculenta HOM05D000126 ORTHO05D000085 1.0e-09 68.9 169 28.4
Aa31LG8G14090 Aethionema arabicum HOM05D002972 ORTHO05D002272 2.3e-09 67.8 140 27.1
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 2.3e-09 67.8 174 25.9
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 3.9e-09 67.0 208 29.3
MD10G1125400 Malus domestica HOM05D002972 ORTHO05D002272 6.7e-09 66.2 173 28.9
MD05G1122800 Malus domestica HOM05D002972 ORTHO05D002272 1.5e-08 65.1 219 28.8
Eucgr.H04968 Eucalyptus grandis HOM05D000909 ORTHO05D000928 2.0e-08 64.7 81 40.7
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 2.6e-08 64.3 123 30.9
HanXRQChr02g0033881 Helianthus annuus HOM05D002069 ORTHO05D002997 2.6e-08 64.3 139 25.9
Lalb_Chr07g0190491 Lupinus albus HOM05D008992 ORTHO05D002272 2.6e-08 64.3 127 33.1
BcaB03g11788 Brassica carinata HOM05D002972 ORTHO05D002272 3.3e-08 63.9 96 33.3
BcaC01g00847 Brassica carinata HOM05D002972 ORTHO05D002272 4.4e-08 63.5 96 33.3
C03p85160 Brassica napus HOM05D002972 ORTHO05D002272 4.4e-08 63.5 96 33.3
BolC3t20805H Brassica oleracea HOM05D002972 ORTHO05D002272 4.4e-08 63.5 96 33.3
CiPaw.01G031100 Carya illinoinensis HOM05D000909 ORTHO05D000928 4.4e-08 63.5 106 34.9
A08p16350 Brassica napus HOM05D002972 ORTHO05D002272 5.7e-08 63.2 115 31.3
BraA08t33603Z Brassica rapa HOM05D002972 ORTHO05D002272 5.7e-08 63.2 96 33.3
AT2G16900 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 7.4e-08 62.8 140 25.7
CiPaw.01G031200 Carya illinoinensis HOM05D000909 ORTHO05D000928 7.4e-08 62.8 106 34.9
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 7.4e-08 62.8 144 27.1
COL.COLO4_07334 Corchorus olitorius HOM05D002972 ORTHO05D002272 9.7e-08 62.4 191 27.2
Lj2g0020937 Lotus japonicus HOM05D000909 ORTHO05D000928 9.7e-08 62.4 90 35.6
MD15G1271000 Malus domestica HOM05D000909 ORTHO05D000928 9.7e-08 62.4 110 32.7
Medtr1g112660 Medicago truncatula HOM05D002972 ORTHO05D002272 9.7e-08 62.4 161 25.5
Atru.chr5.3374 Acer truncatum HOM05D002972 ORTHO05D002272 1.3e-07 62.0 108 27.8
AL3G49660 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 1.3e-07 62.0 140 25.0
CARHR107190 Cardamine hirsuta HOM05D002972 ORTHO05D002272 1.3e-07 62.0 132 27.3
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 1.3e-07 62.0 161 27.3
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.3e-07 62.0 209 28.7
Glyma.16G142700 Glycine max HOM05D000909 ORTHO05D000928 1.3e-07 62.0 90 34.4
RcHm_v2.0_Chr2g0102971 Rosa chinensis HOM05D000909 ORTHO05D000928 1.3e-07 62.0 89 34.8
Ca_22245_v3 Cicer arietinum L. HOM05D000909 ORTHO05D000928 1.7e-07 61.6 90 34.4
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 1.7e-07 61.6 225 25.3
FAN26G2575 Fragaria x ananassa HOM05D000909 ORTHO05D000928 1.7e-07 61.6 104 33.7
Glyma.02G059900 Glycine max HOM05D000909 ORTHO05D000928 1.7e-07 61.6 90 34.4
CDE02G1008 Ceratophyllum demersum HOM05D000909 ORTHO05D000928 2.2e-07 61.2 81 37.0
FAN19G2712 Fragaria x ananassa HOM05D000909 ORTHO05D000928 2.2e-07 61.2 99 32.3
FAN23G1056 Fragaria x ananassa HOM05D000909 ORTHO05D000928 2.2e-07 61.2 104 33.7
Lalb_Chr12g0204211 Lupinus albus HOM05D008992 ORTHO05D002272 2.2e-07 61.2 134 29.1
BcaNung00626 Brassica carinata HOM05D002972 ORTHO05D002272 2.8e-07 60.8 140 27.1
CiPaw.01G031300 Carya illinoinensis HOM05D000909 ORTHO05D000928 2.8e-07 60.8 106 34.0
COL.COLO4_22001 Corchorus olitorius HOM05D002972 ORTHO05D002272 2.8e-07 60.8 151 29.1
Gohir.D05G200300 Gossypium hirsutum HOM05D000909 ORTHO05D000928 2.8e-07 60.8 93 35.5
Gorai.009G205600 Gossypium raimondii HOM05D000909 ORTHO05D000928 2.8e-07 60.8 93 35.5
Phvul.003G250800 Phaseolus vulgaris HOM05D000909 ORTHO05D000928 2.8e-07 60.8 90 33.3
Psat0s2215g0360 Pisum sativum HOM05D000909 ORTHO05D000928 2.8e-07 60.8 109 33.9
Potri.005G128900 Populus trichocarpa HOM05D000909 ORTHO05D000928 2.8e-07 60.8 110 29.1
CARHR294290 Cardamine hirsuta HOM05D002972 ORTHO05D002272 3.7e-07 60.5 148 30.4
Cfa018450 Carpinus fangiana HOM05D000909 ORTHO05D000928 3.7e-07 60.5 92 33.7
Haze_17617 Corylus avellana HOM05D000909 ORTHO05D000928 3.7e-07 60.5 92 33.7
Duzib093G1011 Durio zibethinus HOM05D000909 ORTHO05D000928 3.7e-07 60.5 93 34.4
Glyma.11G062400 Glycine max HOM05D000909 ORTHO05D000928 3.7e-07 60.5 110 32.7
Gohir.A05G197200 Gossypium hirsutum HOM05D000909 ORTHO05D000928 3.7e-07 60.5 93 35.5
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 3.7e-07 60.5 177 23.2
MBI16_g10977_MAGBIO Magnolia biondii HOM05D000909 ORTHO05D000928 3.7e-07 60.5 90 36.7
Potri.005G128800 Populus trichocarpa HOM05D000909 ORTHO05D000928 3.7e-07 60.5 110 29.1
VMungo0251G1639 Vigna mungo HOM05D000909 ORTHO05D000928 3.7e-07 60.5 75 37.3
AL7G16110 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 4.8e-07 60.1 96 31.2
arahy.Tifrunner.gnm1.ann1.8D0ADR Arachis hypogaea HOM05D000909 ORTHO05D000928 4.8e-07 60.1 90 33.3
arahy.Tifrunner.gnm1.ann1.Z2QYJ5 Arachis hypogaea HOM05D000909 ORTHO05D000928 4.8e-07 60.1 90 33.3
C01p03750 Brassica napus HOM05D002972 ORTHO05D002272 4.8e-07 60.1 140 26.4
BolC1t00367H Brassica oleracea HOM05D002972 ORTHO05D002272 4.8e-07 60.1 140 26.4
Carub.0006s2749 Capsella rubella HOM05D002972 ORTHO05D002272 4.8e-07 60.1 135 28.1
CiPaw.02G014400 Carya illinoinensis HOM05D000909 ORTHO05D000928 4.8e-07 60.1 92 33.7
CDE02G0673 Ceratophyllum demersum HOM05D000909 ORTHO05D000928 4.8e-07 60.1 91 35.2
Eucgr.F01528 Eucalyptus grandis HOM05D000909 ORTHO05D000928 4.8e-07 60.1 78 38.5
PSO339G2072 Papaver somniferum HOM05D000909 ORTHO05D000928 4.8e-07 60.1 106 30.2
A01p03430 Brassica napus HOM05D002972 ORTHO05D002272 6.3e-07 59.7 140 27.1
A07p04220 Brassica napus HOM05D002972 ORTHO05D002272 6.3e-07 59.7 132 25.8
BraA01t00330Z Brassica rapa HOM05D002972 ORTHO05D002272 6.3e-07 59.7 140 27.1
ClCG02G012870 Citrullus lanatus HOM05D000909 ORTHO05D000928 6.3e-07 59.7 90 33.3
Glyma.01G179800 Glycine max HOM05D000909 ORTHO05D000928 6.3e-07 59.7 110 31.8
Medtr8g078410 Medicago truncatula HOM05D000909 ORTHO05D000928 6.3e-07 59.7 108 31.5
PSO513G0106 Papaver somniferum HOM05D000909 ORTHO05D000928 6.3e-07 59.7 106 30.2
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 6.3e-07 59.7 190 26.3
SHI08712 Sapria himalayana HOM05D000909 ORTHO05D000928 6.3e-07 59.7 69 39.1
BcaB03g16425 Brassica carinata HOM05D002972 ORTHO05D002272 8.2e-07 59.3 132 25.8
BcaC06g36191 Brassica carinata HOM05D002972 ORTHO05D002272 8.2e-07 59.3 132 25.8
C07p06710 Brassica napus HOM05D002972 ORTHO05D002272 8.2e-07 59.3 132 25.8
BolC7t41094H Brassica oleracea HOM05D002972 ORTHO05D002272 8.2e-07 59.3 132 25.8
BraA07t28213Z Brassica rapa HOM05D002972 ORTHO05D002272 8.2e-07 59.3 132 25.8
Carub.0003s3071 Capsella rubella HOM05D002972 ORTHO05D002272 8.2e-07 59.3 132 25.0
Carub.0007s0520 Capsella rubella HOM05D002972 ORTHO05D002272 8.2e-07 59.3 132 28.8
Migut.I00843 Erythranthe guttata HOM05D002972 ORTHO05D002272 8.2e-07 59.3 156 27.6
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 8.2e-07 59.3 187 27.8
Phvul.007G019100 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 8.2e-07 59.3 165 27.3
VMungo1215G2471 Vigna mungo HOM05D000909 ORTHO05D000928 8.2e-07 59.3 110 32.7
Atru.chr13.558 Acer truncatum HOM05D000909 ORTHO05D000928 1.1e-06 58.9 90 35.6
AT4G35110 Arabidopsis thaliana HOM05D002972 ORTHO05D002272 1.1e-06 58.9 96 30.2
Thhalv10025438m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 1.1e-06 58.9 126 26.2
MD02G1156700 Malus domestica HOM05D000909 ORTHO05D000928 1.1e-06 58.9 89 34.8
PSO541G4662 Papaver somniferum HOM05D000909 ORTHO05D000928 1.1e-06 58.9 119 30.3
PSO675G8985 Papaver somniferum HOM05D000909 ORTHO05D000928 1.1e-06 58.9 119 30.3
Phvul.002G024900 Phaseolus vulgaris HOM05D000909 ORTHO05D000928 1.1e-06 58.9 89 33.7
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 1.1e-06 58.9 142 28.2
Sabra05G0104800 Salix brachista HOM05D000909 ORTHO05D000928 1.1e-06 58.9 89 32.6
Sp7g32880 Schrenkiella parvula HOM05D002972 ORTHO05D002272 1.1e-06 58.9 128 25.8
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 1.1e-06 58.9 170 24.7
CiPaw.02G187700 Carya illinoinensis HOM05D000909 ORTHO05D000928 1.4e-06 58.5 111 31.5
Lj4g0019552 Lotus japonicus HOM05D000909 ORTHO05D000928 1.4e-06 58.5 90 33.3
Nn1g05121 Nelumbo nucifera HOM05D000909 ORTHO05D000928 1.4e-06 58.5 90 36.7
Potri.007G032500 Populus trichocarpa HOM05D000909 ORTHO05D000928 1.4e-06 58.5 112 29.5
Prupe.7G147100 Prunus persica HOM05D000909 ORTHO05D000928 1.4e-06 58.5 110 31.8
TWI73G1020 Tripterygium wilfordii HOM05D000909 ORTHO05D000928 1.4e-06 58.5 90 32.2
CDE01G0657 Ceratophyllum demersum HOM05D000909 ORTHO05D000928 1.8e-06 58.2 112 31.2
FAN28G0685 Fragaria x ananassa HOM05D000909 ORTHO05D000928 1.8e-06 58.2 105 32.4
Solyc05g052910.4 Solanum lycopersicum HOM05D000909 ORTHO05D000928 1.8e-06 58.2 106 29.2
Sopen05g031420 Solanum pennellii HOM05D000909 ORTHO05D000928 1.8e-06 58.2 108 27.8
THA.LOC104807376 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 1.8e-06 58.2 132 26.5
ATR0733G165 Amborella trichopoda HOM05D000909 ORTHO05D000928 2.4e-06 57.8 108 32.4
A03p46120 Brassica napus HOM05D002972 ORTHO05D002272 2.4e-06 57.8 138 24.6
FvH4_1g14310 Fragaria vesca HOM05D000909 ORTHO05D000928 2.4e-06 57.8 90 33.3
Phvul.009G118800 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 2.4e-06 57.8 120 25.0
TPR.G29849 Trifolium pratense HOM05D000909 ORTHO05D000928 2.4e-06 57.8 101 33.7
Aa31LG2G15380 Aethionema arabicum HOM05D002972 ORTHO05D002272 3.1e-06 57.4 96 30.2
BraA03t13740Z Brassica rapa HOM05D002972 ORTHO05D002272 3.1e-06 57.4 138 24.6
CANSAT25G0543 Cannabis sativa HOM05D000909 ORTHO05D000928 3.1e-06 57.4 92 32.6
Cpa.g.sc64.39 Carica papaya HOM05D000909 ORTHO05D000928 3.1e-06 57.4 69 37.7
Medtr5g018900 Medicago truncatula HOM05D000909 ORTHO05D000928 3.1e-06 57.4 110 32.7
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 3.1e-06 57.4 135 26.7
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 3.1e-06 57.4 135 26.7
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 3.1e-06 57.4 239 23.4
TPR.G31553 Trifolium pratense HOM05D000909 ORTHO05D000928 3.1e-06 57.4 90 33.3
HPP92_019226 Vanilla planifolia HOM05D000909 ORTHO05D000928 3.1e-06 57.4 114 30.7
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 4.1e-06 57.0 89 33.7
Dinv39374 Davidia involucrata HOM05D000909 ORTHO05D000928 4.1e-06 57.0 90 34.4
Peaxi162Scf00164g01524 Petunia axillaris HOM05D000909 ORTHO05D000928 4.1e-06 57.0 115 29.6
Psat4g090680 Pisum sativum HOM05D000909 ORTHO05D000928 4.1e-06 57.0 90 33.3
Potri.014G039900 Populus trichocarpa HOM05D000909 ORTHO05D000928 4.1e-06 57.0 90 35.6
PGR119G2364 Punica granatum HOM05D000909 ORTHO05D000928 4.1e-06 57.0 90 32.2
PGSC0003DMG400027192 Solanum tuberosum HOM05D000909 ORTHO05D000928 4.1e-06 57.0 108 27.8
Thecc.08G021000 Theobroma cacao HOM05D000909 ORTHO05D000928 4.1e-06 57.0 93 34.4
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 4.1e-06 57.0 195 24.1
CARHR202160 Cardamine hirsuta HOM05D002972 ORTHO05D002272 5.3e-06 56.6 200 27.0
CDE07G0980 Ceratophyllum demersum HOM05D000909 ORTHO05D000928 5.3e-06 56.6 92 32.6
Ciclev10001015m.g Citrus clementina HOM05D000909 ORTHO05D000928 5.3e-06 56.6 99 32.3
Ciclev10025331m.g Citrus clementina HOM05D000909 ORTHO05D000928 5.3e-06 56.6 93 28.0
Sp3g30180 Schrenkiella parvula HOM05D002972 ORTHO05D002272 5.3e-06 56.6 140 26.4
TAR376G0734 Trochodendron aralioides HOM05D000909 ORTHO05D000928 5.3e-06 56.6 75 37.3
TAR633G1264 Trochodendron aralioides HOM05D002972 ORTHO05D002272 5.3e-06 56.6 158 26.6
Aqoxy2G02365 Aquilegia oxysepala HOM05D000909 ORTHO05D000928 7.0e-06 56.2 104 28.8
Aqoxy6G00999 Aquilegia oxysepala HOM05D000909 ORTHO05D000928 7.0e-06 56.2 99 34.3
CAN.G945.10 Capsicum annuum HOM05D000909 ORTHO05D000928 7.0e-06 56.2 108 27.8
MELO3C010913.2 Cucumis melo HOM05D000909 ORTHO05D000928 7.0e-06 56.2 89 33.7
CsaV3_2G028370 Cucumis sativus L. HOM05D000909 ORTHO05D000928 7.0e-06 56.2 89 33.7
Eucgr.I00203 Eucalyptus grandis HOM05D000909 ORTHO05D000928 7.0e-06 56.2 69 34.8
Thhalv10022729m.g Eutrema salsugineum HOM05D002972 ORTHO05D002272 7.0e-06 56.2 141 25.5
FAN24G2670 Fragaria x ananassa HOM05D000909 ORTHO05D000928 7.0e-06 56.2 88 33.0
Lalb_Chr09g0322741 Lupinus albus HOM05D000909 ORTHO05D000928 7.0e-06 56.2 101 31.7
Zm00001eb268250 Zea mays HOM05D000909 ORTHO05D000928 7.0e-06 56.2 99 32.3
CDE02G3639 Ceratophyllum demersum HOM05D000909 ORTHO05D000928 9.1e-06 55.8 107 28.0
Ca_24818_v3 Cicer arietinum L. HOM05D000909 ORTHO05D000928 9.1e-06 55.8 90 32.2
ECA247G0713 Erigeron canadensis HOM05D000909 ORTHO05D000928 9.1e-06 55.8 77 36.4
Eucgr.H04966 Eucalyptus grandis HOM05D000909 ORTHO05D000928 9.1e-06 55.8 109 29.4
THA.LOC104819651 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 9.1e-06 55.8 139 25.2


User provided reference genes

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