Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.4e-153 546.2 275 100.0
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.8e-108 396.4 265 75.1
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 7.7e-107 391.0 284 73.2
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.0e-106 390.6 284 73.2
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.9e-105 386.3 258 75.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.9e-105 386.3 258 76.0
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 3.3e-105 385.6 260 74.2
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 2.1e-104 382.9 252 76.2
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 2.1e-104 382.9 260 74.2
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 2.8e-104 382.5 259 75.7
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 3.6e-104 382.1 252 75.4
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.0e-103 380.6 261 73.2
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 4.0e-103 378.6 260 74.6
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.2e-102 377.1 252 75.0
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 2.0e-102 376.3 264 72.3
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.0e-102 376.3 267 72.3
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 5.7e-102 374.8 236 78.0
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 3.7e-101 372.1 258 74.0
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 3.7e-101 372.1 258 74.0
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.1e-100 370.5 261 71.6
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 9.2e-100 367.5 260 71.9
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.0e-99 366.3 260 69.6
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 2.7e-99 365.9 260 70.4
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 2.7e-99 365.9 215 81.4
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 3.5e-99 365.5 260 69.2
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.5e-99 365.5 261 72.0
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 4.6e-99 365.2 260 70.0
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 4.6e-99 365.2 260 70.8
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 7.8e-99 364.4 260 70.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.7e-98 363.2 233 76.8
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 6.6e-98 361.3 260 68.5
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 3.3e-97 359.0 252 72.6
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 3.3e-97 359.0 212 83.5
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 3.3e-97 359.0 253 72.3
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 3.3e-97 359.0 250 71.2
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.3e-97 358.6 241 73.4
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.3e-97 358.6 212 83.0
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 5.6e-97 358.2 261 69.7
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.6e-97 358.2 260 71.2
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 5.6e-97 358.2 256 71.1
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.6e-96 356.7 231 74.5
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.1e-96 356.3 250 72.0
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 4.7e-96 355.1 217 78.8
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 6.1e-96 354.8 249 72.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 6.1e-96 354.8 260 69.2
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.4e-95 353.6 261 70.1
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 1.4e-95 353.6 256 69.9
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.8e-95 353.2 258 67.8
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 1.8e-95 353.2 260 69.2
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.8e-95 353.2 256 69.9
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 3.1e-95 352.4 266 69.5
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 3.1e-95 352.4 228 74.6
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 4.0e-95 352.1 223 76.7
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 5.2e-95 351.7 231 73.6
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 5.2e-95 351.7 217 77.9
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 6.8e-95 351.3 217 78.3
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 6.8e-95 351.3 235 72.3
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.2e-94 350.5 217 77.0
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 1.2e-94 350.5 261 69.0
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 2.0e-94 349.7 223 76.2
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.0e-94 349.7 260 66.9
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 3.4e-94 349.0 223 76.7
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 4.4e-94 348.6 215 77.7
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 4.4e-94 348.6 232 75.0
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 4.4e-94 348.6 242 72.3
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 4.4e-94 348.6 220 75.9
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.4e-94 348.6 260 66.5
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 5.8e-94 348.2 250 68.4
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 5.8e-94 348.2 260 70.0
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 5.8e-94 348.2 231 74.5
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 9.8e-94 347.4 229 73.8
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.3e-93 347.1 210 79.5
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 2.2e-93 346.3 259 67.6
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.2e-93 346.3 215 77.7
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 3.7e-93 345.5 227 74.0
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 4.9e-93 345.1 216 75.5
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 4.9e-93 345.1 232 72.4
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 4.9e-93 345.1 217 76.5
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.4e-92 343.6 232 72.0
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 4.1e-92 342.0 217 76.0
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 4.1e-92 342.0 217 76.0
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 9.2e-92 340.9 215 76.7
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 2.7e-91 339.3 231 74.5
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 3.5e-91 339.0 215 76.3
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 6.0e-91 338.2 195 84.6
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 7.8e-91 337.8 227 72.7
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 1.3e-90 337.0 223 75.3
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 8.6e-90 334.3 248 69.4
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 1.6e-88 330.1 241 67.2
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.6e-88 330.1 254 65.7
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.1e-88 329.7 212 72.6
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.1e-88 327.8 246 66.7
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.4e-87 327.0 243 70.0
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.8e-87 326.6 214 75.7
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.1e-87 325.9 327 56.3
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.0e-87 325.5 246 65.9
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.5e-86 323.6 218 74.3
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 2.0e-86 323.2 241 66.0
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.9e-84 316.6 212 71.7
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 7.8e-83 311.2 210 70.0
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 8.6e-82 307.8 194 77.3
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.5e-81 304.3 239 66.1
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.2e-80 303.9 212 72.6
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 3.6e-80 302.4 175 82.3
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 3.6e-80 302.4 207 70.0
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.8e-79 298.1 321 52.6
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 8.9e-79 297.7 202 72.3
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.5e-78 297.0 174 81.6
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.0e-78 296.6 257 63.0
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 6.0e-75 285.0 211 67.8
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 1.7e-74 283.5 210 64.3
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.6e-74 281.6 183 74.9
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 8.6e-74 281.2 209 65.1
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 8.1e-72 274.6 208 65.4
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 2.0e-70 270.0 209 63.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.8e-69 265.8 218 61.0
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.4e-68 263.1 218 62.8
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.7e-66 256.9 208 64.4
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 2.3e-66 256.5 208 58.7
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 5.1e-66 255.4 197 67.5
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.5e-65 253.1 170 72.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 5.6e-65 251.9 209 62.7
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 3.8e-61 239.2 175 68.6
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 3.2e-60 236.1 260 51.9
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.3e-58 229.9 185 63.8
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.6e-56 223.8 125 86.4
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 5.8e-54 215.3 221 53.8
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 3.3e-49 199.5 119 79.0
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 4.0e-47 192.6 115 81.7
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 7.6e-46 188.3 133 73.7
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.5e-41 174.1 106 79.2
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.3e-41 172.9 202 45.5
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 6.3e-40 168.7 108 75.9
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 2.4e-39 166.8 96 82.3
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.5e-36 156.8 126 64.3
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.6e-35 154.1 125 57.6
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.8e-34 150.6 89 80.9
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.9e-33 147.1 157 50.3
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.2e-32 143.7 95 72.6
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.4e-31 141.0 88 75.0
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 4.1e-31 139.4 108 64.8
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.5e-30 137.5 194 42.3
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 3.4e-30 136.3 82 76.8
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 8.8e-26 121.7 92 66.3
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 5.3e-23 112.5 88 61.4
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.5e-22 110.9 70 78.6
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.4e-22 109.8 65 78.5
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.4e-22 109.8 65 76.9
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 1.0e-21 108.2 63 79.4
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 1.0e-21 108.2 63 79.4
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.2e-20 103.2 69 72.5
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.1e-18 95.9 93 59.1
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.5e-17 94.4 197 37.6
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 9.7e-17 91.7 90 51.1
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 5.0e-13 79.3 46 78.3
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.0e-09 67.4 63 54.0
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 4.5e-06 56.2 34 67.6


User provided reference genes

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