Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21159 Davidia involucrata HOM05D002582 ORTHO05D002781 1.0e-117 426.8 217 100.0
Dinv31725 Davidia involucrata HOM05D002582 ORTHO05D002781 4.0e-90 335.1 211 83.9
Hma1.2p1_2017F.1_g311170 Hydrangea macrophylla HOM05D002582 ORTHO05D002781 1.4e-74 283.5 209 72.2
CSS0000696 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 1.2e-73 280.4 211 73.0
GSVIVG01033899001 Vitis vinifera HOM05D002582 ORTHO05D002781 9.2e-71 270.8 211 71.6
TAR369G0677 Trochodendron aralioides HOM05D002582 ORTHO05D002781 1.3e-69 266.9 211 66.8
Lj2A144G24 Lonicera japonica HOM05D002582 ORTHO05D002781 1.7e-69 266.5 198 72.2
Migut.J00661 Erythranthe guttata HOM05D002582 ORTHO05D002781 3.0e-69 265.8 209 69.4
QL07p038072 Quercus lobata HOM05D002582 ORTHO05D002781 4.3e-68 261.9 214 66.4
Atru.chr8.1437 Acer truncatum HOM05D002582 ORTHO05D002781 1.2e-67 260.4 211 65.9
Actinidia05397 Actinidia chinensis HOM05D002582 ORTHO05D002781 3.6e-67 258.8 212 68.9
Prupe.7G100800 Prunus persica HOM05D002582 ORTHO05D002781 3.6e-67 258.8 218 66.5
Cfa016652 Carpinus fangiana HOM05D002582 ORTHO05D002781 1.1e-66 257.3 211 65.9
Potri.016G074900 Populus trichocarpa HOM05D002582 ORTHO05D002781 1.4e-66 256.9 209 64.6
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 1.7e-64 250.0 197 70.6
Gohir.D04G096400 Gossypium hirsutum HOM05D002582 ORTHO05D002781 1.9e-63 246.5 211 63.0
Gorai.009G399100 Gossypium raimondii HOM05D002582 ORTHO05D002781 1.9e-63 246.5 212 64.2
Haze_19657 Corylus avellana HOM05D002582 ORTHO05D002781 4.1e-63 245.4 198 67.2
Eucgr.A02629 Eucalyptus grandis HOM05D002582 ORTHO05D002781 4.1e-63 245.4 210 62.4
Gohir.A04G059752 Gossypium hirsutum HOM05D002582 ORTHO05D002781 5.4e-63 245.0 212 63.7
Cc06_g06230 Coffea canephora HOM05D002582 ORTHO05D002781 1.2e-62 243.8 211 62.1
Gohir.A04G059778 Gossypium hirsutum HOM05D002582 ORTHO05D002781 1.2e-62 243.8 210 62.9
Thecc.05G096300 Theobroma cacao HOM05D002582 ORTHO05D002781 1.6e-62 243.4 212 66.0
Duzib093G1566 Durio zibethinus HOM05D002582 ORTHO05D002781 4.6e-62 241.9 212 64.2
MD12G1031800 Malus domestica HOM05D002582 ORTHO05D002781 6.0e-62 241.5 218 62.4
Potri.006G208300 Populus trichocarpa HOM05D002582 ORTHO05D002781 1.0e-61 240.7 211 61.6
Sabra06G0160200 Salix brachista HOM05D002582 ORTHO05D002781 3.0e-61 239.2 211 61.1
MD14G1032100 Malus domestica HOM05D002582 ORTHO05D002781 3.9e-61 238.8 212 63.7
Nn6g34803 Nelumbo nucifera HOM05D002582 ORTHO05D002781 1.5e-60 236.9 211 63.0
CANSAT64G0891 Cannabis sativa HOM05D002582 ORTHO05D002781 1.9e-60 236.5 212 63.2
vmacro14777 Vaccinium macrocarpon HOM05D002582 ORTHO05D002781 4.3e-60 235.3 264 54.5
Manes.08G028900 Manihot esculenta HOM05D002582 ORTHO05D002781 7.3e-60 234.6 210 61.0
Aqoxy2G01049 Aquilegia oxysepala HOM05D002582 ORTHO05D002781 9.6e-60 234.2 211 63.5
TWI74G1463 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 9.6e-60 234.2 212 61.3
Sabra16G0080300 Salix brachista HOM05D002582 ORTHO05D002781 1.6e-59 233.4 211 60.2
Ciclev10011033m.g Citrus clementina HOM05D002582 ORTHO05D002781 4.7e-59 231.9 212 62.3
MSTRG.19280 Avicennia marina HOM05D002582 ORTHO05D002781 6.2e-59 231.5 211 60.7
TWI77G0235 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 6.2e-59 231.5 210 62.4
Sabra16G0077500 Salix brachista HOM05D002582 ORTHO05D002781 1.4e-58 230.3 211 60.2
MSTRG.5869 Avicennia marina HOM05D002582 ORTHO05D002781 1.8e-58 229.9 208 58.2
Lsat_1_v5_gn_6_35600 Lactuca sativa HOM05D002582 ORTHO05D002781 8.9e-58 227.6 204 64.2
Nitab4.5_0000573g0120 Nicotiana tabacum HOM05D002582 ORTHO05D002781 3.4e-57 225.7 211 58.8
PGR004G1279 Punica granatum HOM05D002582 ORTHO05D002781 1.1e-55 220.7 231 54.5
FvH4_6g19540 Fragaria vesca HOM05D002582 ORTHO05D002781 2.1e-54 216.5 219 59.4
RcHm_v2.0_Chr3g0474881 Rosa chinensis HOM05D002582 ORTHO05D002781 2.1e-54 216.5 219 59.8
FAN14G0204 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.7e-54 216.1 212 60.8
COL.COLO4_29665 Corchorus olitorius HOM05D002582 ORTHO05D002781 6.0e-54 214.9 175 69.1
Solyc09g010280.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 7.8e-54 214.5 211 56.9
CAN.G397.91 Capsicum annuum HOM05D002582 ORTHO05D002781 1.3e-53 213.8 216 54.6
FAN02G2142 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.7e-53 213.4 219 58.4
Sc02g0000460 Simmondsia chinensis HOM05D002582 ORTHO05D002781 3.0e-53 212.6 215 56.7
ClCG04G010240 Citrullus lanatus HOM05D002582 ORTHO05D002781 3.9e-53 212.2 211 59.7
FAN05G2352 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.1e-53 211.8 219 58.4
FAN05G0212 Fragaria x ananassa HOM05D002582 ORTHO05D002781 6.6e-53 211.5 219 58.4
FAN09G2395 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.5e-52 210.3 219 57.5
Sed0005359 Sechium edule HOM05D002582 ORTHO05D002781 1.9e-52 209.9 211 55.9
Sopen09g004980 Solanum pennellii HOM05D002582 ORTHO05D002781 1.9e-52 209.9 211 55.9
CsaV3_6G040880 Cucumis sativus L. HOM05D002582 ORTHO05D002781 2.5e-52 209.5 211 57.3
Peaxi162Scf00013g01411 Petunia axillaris HOM05D002582 ORTHO05D002781 5.6e-52 208.4 197 57.9
MELO3C024566.2 Cucumis melo HOM05D002582 ORTHO05D002781 1.6e-51 206.8 209 57.4
PSO339G0972 Papaver somniferum HOM05D002582 ORTHO05D002781 8.1e-51 204.5 181 61.9
PSO801G0394 Papaver somniferum HOM05D002582 ORTHO05D002781 1.4e-50 203.8 181 62.4
HanXRQChr09g0238341 Helianthus annuus HOM05D002582 ORTHO05D002781 1.8e-50 203.4 199 58.8
Sed0021820 Sechium edule HOM05D002582 ORTHO05D002781 1.5e-49 200.3 201 56.7
TAR623G1676 Trochodendron aralioides HOM05D002582 ORTHO05D002781 2.9e-48 196.1 126 81.0
Lalb_Chr06g0172521 Lupinus albus HOM05D002582 ORTHO05D002781 4.9e-48 195.3 206 57.8
Glyma.10G075900 Glycine max HOM05D002582 ORTHO05D002781 6.4e-48 194.9 212 54.2
VMungo0720G2392 Vigna mungo HOM05D002582 ORTHO05D002781 1.1e-47 194.1 204 55.9
Glyma.02G200700 Glycine max HOM05D002582 ORTHO05D002781 1.9e-47 193.4 199 56.8
Lalb_Chr02g0154741 Lupinus albus HOM05D002582 ORTHO05D002781 5.4e-47 191.8 213 54.0
AUR62028482 Chenopodium quinoa HOM05D002582 ORTHO05D002781 7.1e-47 191.4 198 55.6
Phvul.007G230450 Phaseolus vulgaris HOM05D002582 ORTHO05D002781 7.1e-47 191.4 204 56.9
Ah.08g210330 Amaranthus hybridus HOM05D002582 ORTHO05D002781 1.6e-46 190.3 179 60.3
Sp6g36660 Schrenkiella parvula HOM05D002582 ORTHO05D002781 2.7e-46 189.5 211 53.6
THA.LOC104816603 Tarenaya hassleriana HOM05D002582 ORTHO05D002781 3.5e-46 189.1 211 54.5
EL10Ac7g16845 Beta vulgaris HOM05D002582 ORTHO05D002781 7.9e-46 188.0 203 53.7
Aa31LG11G7180 Aethionema arabicum HOM05D002582 ORTHO05D002781 1.3e-45 187.2 211 54.0
AUR62006244 Chenopodium quinoa HOM05D002582 ORTHO05D002781 3.0e-45 186.0 203 54.7
arahy.Tifrunner.gnm1.ann1.L9F1QW Arachis hypogaea HOM05D002582 ORTHO05D002781 1.9e-44 183.3 214 53.3
arahy.Tifrunner.gnm1.ann1.YV8VHR Arachis hypogaea HOM05D002582 ORTHO05D002781 1.9e-44 183.3 214 53.3
ECA233G2523 Erigeron canadensis HOM05D002582 ORTHO05D002781 3.3e-44 182.6 152 66.4
Lj5g0016358 Lotus japonicus HOM05D002582 ORTHO05D002781 7.4e-44 181.4 223 50.7
SGA_v2.0_scaffold13G06691 Striga asiatica HOM05D002582 ORTHO05D002781 1.6e-43 180.3 232 50.0
Medtr1g058390 Medicago truncatula HOM05D002582 ORTHO05D002781 2.8e-43 179.5 214 52.8
BcaB01g05735 Brassica carinata HOM05D002582 ORTHO05D002781 4.8e-43 178.7 212 50.9
CARHR206920 Cardamine hirsuta HOM05D002582 ORTHO05D002781 4.8e-43 178.7 211 51.7
Cpa.g.c31932.2 Carica papaya HOM05D002582 ORTHO05D002781 1.1e-42 177.6 179 57.5
TPR.G40320 Trifolium pratense HOM05D002582 ORTHO05D002781 1.1e-42 177.6 182 56.0
Thhalv10012627m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 1.8e-42 176.8 211 51.2
Oeu017695.2 Olea europaea HOM05D002582 ORTHO05D002781 1.2e-41 174.1 124 75.8
Carub.0006s0509 Capsella rubella HOM05D002582 ORTHO05D002781 1.5e-41 173.7 212 52.4
DCAR_007764 Daucus carota HOM05D002582 ORTHO05D002781 2.6e-41 172.9 132 68.9
DCAR_013417 Daucus carota HOM05D002582 ORTHO05D002781 5.8e-41 171.8 125 72.0
CiPaw.10G012900 Carya illinoinensis HOM05D002582 ORTHO05D002781 1.7e-40 170.2 126 72.2
C03p03010 Brassica napus HOM05D002582 ORTHO05D002781 2.2e-40 169.9 211 50.2
BcaB01g05984 Brassica carinata HOM05D002582 ORTHO05D002781 4.9e-40 168.7 211 49.8
BolC3t12851H Brassica oleracea HOM05D002582 ORTHO05D002781 4.9e-40 168.7 211 49.8
A03p02620 Brassica napus HOM05D002582 ORTHO05D002781 8.4e-40 167.9 210 47.6
BraA03t09623Z Brassica rapa HOM05D002582 ORTHO05D002781 8.4e-40 167.9 210 47.6
Psat3g031120 Pisum sativum HOM05D002582 ORTHO05D002781 5.5e-39 165.2 216 49.1
Sp3g09800 Schrenkiella parvula HOM05D002582 ORTHO05D002781 5.5e-39 165.2 211 49.8
ATR0081G061 Amborella trichopoda HOM05D002582 ORTHO05D002781 1.6e-38 163.7 212 48.1
AT5G06220 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 4.6e-38 162.2 211 49.3
ECA248G1278 Erigeron canadensis HOM05D002582 ORTHO05D002781 6.0e-38 161.8 183 53.0
Ca_09028_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 3.9e-37 159.1 216 48.1
Os08g0482100 Oryza sativa ssp. japonica HOM05D002582 ORTHO05D002781 1.1e-36 157.5 205 43.9
Ca_25956_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 1.9e-36 156.8 124 64.5
Medtr7g105340 Medicago truncatula HOM05D002582 ORTHO05D002781 1.9e-36 156.8 214 47.7
unitig_8.g4208 Utricularia gibba HOM05D002582 ORTHO05D002781 5.6e-36 155.2 187 48.1
BcaB06g25608 Brassica carinata HOM05D002582 ORTHO05D002781 7.4e-36 154.8 211 47.4
CDE04G1506 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 2.1e-35 153.3 199 46.2
Aa31LG3G4950 Aethionema arabicum HOM05D002582 ORTHO05D002781 4.8e-35 152.1 211 46.4
AT3G11560 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 8.1e-35 151.4 212 47.6
Thhalv10020029m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 8.1e-35 151.4 211 48.3
Carub.0003s1088 Capsella rubella HOM05D002582 ORTHO05D002781 2.4e-34 149.8 211 45.0
Zm00001eb033410 Zea mays HOM05D002582 ORTHO05D002781 3.1e-34 149.4 148 52.0
AL6G16220 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 4.0e-34 149.1 180 50.0
SEGI_16826 Sequoiadendron giganteum HOM05D002582 ORTHO05D002781 1.2e-33 147.5 114 61.4
CDE12G0162 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 2.2e-32 143.3 198 42.9
BcaC05g29355 Brassica carinata HOM05D002582 ORTHO05D002781 2.9e-32 142.9 214 46.3
C05p56390 Brassica napus HOM05D002582 ORTHO05D002781 2.9e-32 142.9 214 46.3
BolC5t34306H Brassica oleracea HOM05D002582 ORTHO05D002781 2.9e-32 142.9 214 46.3
BcaC06g32329 Brassica carinata HOM05D002582 ORTHO05D002781 6.5e-32 141.7 169 52.1
C09p70660 Brassica napus HOM05D002582 ORTHO05D002781 6.5e-32 141.7 215 46.0
Psat6g080120 Pisum sativum HOM05D002582 ORTHO05D002781 6.5e-32 141.7 186 48.9
CARHR086110 Cardamine hirsuta HOM05D002582 ORTHO05D002781 5.5e-31 138.7 211 44.5
A05p37770 Brassica napus HOM05D002582 ORTHO05D002781 7.1e-31 138.3 210 44.8
BraA05t22572Z Brassica rapa HOM05D002582 ORTHO05D002781 7.1e-31 138.3 210 44.8
BolC9t59822H Brassica oleracea HOM05D002582 ORTHO05D002781 6.0e-30 135.2 159 53.5
HPP92_013111 Vanilla planifolia HOM05D002582 ORTHO05D002781 6.0e-30 135.2 187 42.8
BcaC06g32587 Brassica carinata HOM05D002582 ORTHO05D002781 1.0e-29 134.4 140 55.0
HPP92_013132 Vanilla planifolia HOM05D002582 ORTHO05D002781 3.0e-29 132.9 187 42.2
A10p30250 Brassica napus HOM05D002582 ORTHO05D002781 6.7e-29 131.7 129 55.8
BraA10t45063Z Brassica rapa HOM05D002582 ORTHO05D002781 8.7e-29 131.3 129 56.6
TPR.G23364 Trifolium pratense HOM05D002582 ORTHO05D002781 2.9e-24 116.3 200 42.0
ECA236G1473 Erigeron canadensis HOM05D002582 ORTHO05D002781 9.3e-23 111.3 86 64.0
TPR.G40540 Trifolium pratense HOM05D002582 ORTHO05D002781 8.7e-21 104.8 137 48.2
Pp3c14_11120 Physcomitrium patens HOM05D002582 ORTHO05D002781 9.7e-20 101.3 85 56.5
Pp3c22_13150 Physcomitrium patens HOM05D002582 ORTHO05D002781 2.6e-17 93.2 121 43.0
Hund03895 Selenicereus undatus HOM05D002582 ORTHO05D002781 2.6e-17 93.2 75 64.0
SMO364G0473 Selaginella moellendorffii HOM05D002582 ORTHO05D002781 3.4e-17 92.8 83 53.0
Pp3c19_18600 Physcomitrium patens HOM05D002582 ORTHO05D002781 1.7e-08 63.9 86 34.9
MD07G1078100 Malus domestica HOM05D000001 ORTHO05D009373 4.7e-06 55.8 84 46.4


User provided reference genes

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