Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 1.5e-45 185.7 85 100.0
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.8e-30 135.6 68 92.6
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.7e-12 75.9 45 73.3
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 2.2e-12 75.5 45 71.1
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 2.9e-12 75.1 45 71.1
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 2.9e-12 75.1 45 71.1
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 2.9e-12 75.1 45 71.1
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.9e-12 75.1 45 71.1
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 5.0e-12 74.3 45 68.9
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.1e-11 73.2 43 69.8
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.4e-11 72.8 45 66.7
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.4e-11 72.8 45 66.7
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 2.5e-11 72.0 44 68.2
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 4.2e-11 71.2 45 64.4
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 4.2e-11 71.2 43 67.4
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 4.2e-11 71.2 45 66.7
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 7.2e-11 70.5 48 62.5
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 9.4e-11 70.1 43 67.4
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.4e-11 70.1 45 64.4
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.4e-11 70.1 45 64.4
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 9.4e-11 70.1 44 68.2
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.2e-10 69.7 45 66.7
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.6e-10 69.3 48 62.5
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.6e-10 69.3 45 64.4
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 2.1e-10 68.9 43 65.1
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 2.1e-10 68.9 41 70.7
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 2.1e-10 68.9 41 70.7
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 2.7e-10 68.6 45 60.0
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.7e-10 68.6 37 75.7
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.7e-10 68.6 43 65.1
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 2.7e-10 68.6 43 65.1
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 2.7e-10 68.6 45 62.2
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 2.7e-10 68.6 45 66.7
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 3.6e-10 68.2 45 66.7
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 3.6e-10 68.2 43 67.4
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 3.6e-10 68.2 42 69.0
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 3.6e-10 68.2 45 64.4
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 4.6e-10 67.8 45 64.4
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 4.6e-10 67.8 44 63.6
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.6e-10 67.8 44 65.9
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 6.1e-10 67.4 43 62.8
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 6.1e-10 67.4 37 73.0
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 7.9e-10 67.0 45 60.0
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 7.9e-10 67.0 35 71.4
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 1.0e-09 66.6 42 64.3
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.4e-09 66.2 45 60.0
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.4e-09 66.2 45 57.8
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 1.4e-09 66.2 44 63.6
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.8e-09 65.9 43 67.4
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.8e-09 65.9 37 70.3
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.8e-09 65.9 46 63.0
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.3e-09 65.5 44 61.4
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 2.3e-09 65.5 42 61.9
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 2.3e-09 65.5 44 63.6
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.3e-09 65.5 41 65.9
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 2.3e-09 65.5 43 62.8
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 2.3e-09 65.5 42 61.9
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.3e-09 65.5 42 61.9
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.3e-09 65.5 42 61.9
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 3.0e-09 65.1 45 60.0
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.0e-09 65.1 46 63.0
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.1e-09 64.3 45 64.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 5.1e-09 64.3 37 67.6
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 5.1e-09 64.3 43 60.5
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 5.1e-09 64.3 37 70.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 5.1e-09 64.3 42 57.1
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 6.7e-09 63.9 45 55.6
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 6.7e-09 63.9 45 62.2
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 6.7e-09 63.9 42 61.9
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 8.8e-09 63.5 45 55.6
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 8.8e-09 63.5 42 57.1
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 8.8e-09 63.5 37 70.3
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 8.8e-09 63.5 42 61.9
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 8.8e-09 63.5 43 58.1
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 8.8e-09 63.5 43 58.1
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.1e-08 63.2 42 61.9
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.1e-08 63.2 45 55.6
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.5e-08 62.8 37 67.6
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.5e-08 62.8 45 55.6
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.9e-08 62.4 42 57.1
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.9e-08 62.4 45 55.6
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.5e-08 62.0 43 62.8
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 2.5e-08 62.0 45 53.3
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 3.3e-08 61.6 43 60.5
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 3.3e-08 61.6 45 53.3
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 3.3e-08 61.6 56 53.6
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 4.3e-08 61.2 45 53.3
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 4.3e-08 61.2 45 53.3
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 5.7e-08 60.8 45 64.4
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 7.4e-08 60.5 45 53.3
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 7.4e-08 60.5 44 63.6
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 9.7e-08 60.1 45 53.3
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 2.2e-07 58.9 45 57.8
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.2e-07 58.9 45 57.8
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 6.3e-07 57.4 48 54.2
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 8.2e-07 57.0 45 53.3
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.1e-06 56.6 45 53.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.4e-06 56.2 39 53.8
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.8e-06 55.8 44 54.5
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.8e-06 55.8 45 60.0
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.8e-06 55.8 45 60.0
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.8e-06 55.8 39 53.8
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.8e-06 55.8 71 40.8
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 3.1e-06 55.1 39 53.8
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 4.1e-06 54.7 45 51.1
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 6.9e-06 53.9 42 54.8
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 9.1e-06 53.5 42 54.8
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 9.1e-06 53.5 33 66.7


User provided reference genes

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