Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 1.9e-245 852.0 431 100.0
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 1.9e-245 852.0 431 100.0
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 5.8e-149 531.6 322 81.7
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 6.0e-146 521.5 350 76.6
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.1e-143 513.1 342 75.1
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.1e-142 510.8 342 74.6
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.3e-140 503.8 345 73.0
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.4e-139 500.4 322 76.1
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 9.2e-139 497.7 361 71.2
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.7e-137 493.4 334 75.7
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.4e-134 483.8 309 77.0
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 6.8e-134 481.5 299 78.3
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.2e-132 476.5 346 70.2
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.9e-132 476.1 346 69.7
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.9e-132 476.1 378 64.8
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 8.3e-132 474.6 325 73.2
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.4e-131 473.8 313 74.8
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.9e-131 473.4 323 72.4
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.4e-131 473.0 324 72.5
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.4e-131 473.0 317 76.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 3.2e-131 472.6 323 73.1
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 4.1e-131 472.2 310 74.2
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.1e-130 469.9 313 72.8
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.1e-130 469.9 316 73.1
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 4.6e-130 468.8 336 71.4
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 2.3e-129 466.5 323 72.1
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.0e-129 466.1 324 71.0
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.1e-128 464.2 321 70.1
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 5.6e-128 461.8 339 70.5
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.1e-127 459.9 321 69.5
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.7e-127 458.8 307 73.3
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 8.1e-127 458.0 309 73.5
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-126 457.6 345 67.8
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.4e-126 456.4 323 70.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 2.4e-126 456.4 324 69.1
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 3.1e-126 456.1 364 65.1
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 3.1e-126 456.1 345 67.5
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 8.9e-126 454.5 345 66.7
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.2e-125 454.1 363 64.7
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.5e-125 453.8 323 70.0
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.5e-125 453.8 332 67.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 1.5e-125 453.8 345 66.1
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.4e-125 452.6 313 73.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.4e-125 452.6 364 64.3
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.4e-125 452.6 307 72.0
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 7.6e-125 451.4 313 70.9
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.6e-125 451.4 345 67.0
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.9e-124 449.5 343 67.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.9e-124 448.7 307 71.7
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 8.4e-124 448.0 350 65.1
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.4e-124 448.0 307 71.3
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 8.4e-124 448.0 341 66.0
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-123 447.6 364 63.7
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.4e-123 446.4 311 71.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.1e-123 444.9 341 65.7
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 7.1e-123 444.9 329 68.4
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.2e-122 444.1 312 71.8
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 2.7e-122 443.0 308 72.4
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.8e-122 441.4 341 64.8
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.0e-121 439.5 340 67.4
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 3.0e-121 439.5 355 64.2
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.9e-120 436.8 316 69.0
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 4.8e-119 432.2 315 67.6
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.1e-118 431.0 322 68.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.4e-118 429.9 324 64.8
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.2e-117 427.6 315 66.7
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 3.4e-117 426.0 310 67.1
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.3e-116 424.1 340 64.7
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.9e-115 420.2 377 59.9
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.2e-115 419.5 315 66.3
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.5e-114 416.0 324 65.1
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.0e-114 415.2 351 62.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.0e-113 412.9 315 63.8
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.9e-112 410.2 324 64.8
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 5.6e-112 408.7 329 61.1
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 9.6e-112 407.9 315 62.2
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.3e-111 407.5 308 64.3
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.8e-110 403.7 331 61.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.4e-110 403.3 325 62.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 6.9e-110 401.7 324 60.2
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 4.2e-107 392.5 326 61.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.4e-107 392.1 313 61.3
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.3e-105 387.5 326 60.7
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.3e-105 387.5 296 62.8
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 3.0e-105 386.3 336 57.4
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 8.7e-105 384.8 311 64.0
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.9e-104 383.6 335 60.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.8e-103 379.8 291 62.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.8e-103 379.0 341 56.6
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.1e-102 377.9 341 57.5
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.0e-100 371.3 291 62.9
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 3.8e-100 369.4 317 57.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 4.2e-99 365.9 290 61.7
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 4.2e-99 365.9 313 58.1
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 5.5e-99 365.5 289 61.2
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.2e-98 364.4 289 61.9
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.2e-98 364.4 301 59.1
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-98 364.0 292 61.3
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.6e-98 362.5 289 61.6
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.9e-98 361.7 290 61.0
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 7.9e-98 361.7 297 62.0
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.0e-97 361.3 289 60.9
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.8e-97 360.5 292 60.6
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.3e-97 360.1 290 60.7
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-97 359.8 290 61.7
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.9e-97 359.4 299 58.9
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.1e-97 359.0 291 60.1
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 6.7e-97 358.6 292 59.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 6.7e-97 358.6 291 60.1
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-96 357.8 292 60.3
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.5e-96 357.5 292 59.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.5e-96 357.5 307 58.6
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.9e-96 357.1 290 61.0
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 5.7e-96 355.5 291 59.8
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.7e-95 352.8 291 59.5
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.7e-95 352.8 291 59.5
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 6.2e-95 352.1 291 58.8
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 8.2e-95 351.7 366 52.5
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.4e-94 350.1 291 58.8
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 5.3e-94 349.0 366 51.9
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.9e-94 348.6 298 60.1
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-93 347.4 291 58.1
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-93 347.4 291 58.1
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 4.5e-93 345.9 367 51.5
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 7.6e-93 345.1 291 58.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-92 344.4 291 57.4
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 8.4e-92 341.7 296 57.1
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.1e-91 341.3 296 57.1
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-91 340.9 302 56.3
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 3.2e-91 339.7 335 54.0
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 7.1e-91 338.6 293 57.3
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 9.3e-91 338.2 296 56.4
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 9.3e-91 338.2 296 56.4
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 4.6e-90 335.9 293 58.4
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 2.3e-89 333.6 286 57.0
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 3.9e-89 332.8 294 55.8
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.4e-86 323.6 290 56.2
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 9.0e-86 321.6 322 51.9
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.2e-85 321.2 312 52.2
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.6e-85 320.1 285 55.4
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 3.4e-85 319.7 308 51.9
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.3e-84 317.8 314 50.6
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 3.8e-84 316.2 304 52.3
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-83 314.3 291 56.0
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.2e-82 311.2 347 47.6
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 2.7e-82 310.1 396 46.2
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.5e-80 303.5 306 51.3
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.5e-80 303.5 328 49.1
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-75 288.1 369 44.7
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.2e-75 286.2 373 43.7
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.6e-74 283.1 373 43.2
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 7.9e-74 282.0 359 44.0
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-73 280.8 337 44.8
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.7e-71 273.1 211 64.5
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 5.9e-69 265.8 291 50.2
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 7.0e-62 242.3 203 57.1
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 9.1e-62 241.9 203 57.1
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.7e-60 237.7 165 70.3
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-49 200.7 164 60.4
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.0e-49 199.9 264 42.4
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.9e-44 183.7 169 59.2
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.2e-34 151.8 216 43.1
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.1e-27 128.6 126 46.8
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.0e-20 105.5 56 89.3
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-20 104.0 83 59.0
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.1e-17 95.5 123 43.9
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 8.4e-15 85.9 88 50.0
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 4.6e-13 80.1 90 48.9
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 2.5e-11 74.3 111 40.5
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.2e-09 66.6 69 49.3
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 3.2e-06 57.4 84 44.0
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 7.1e-06 56.2 96 37.5
Nn1g09019 Nelumbo nucifera HOM05D003903 ORTHO05D278669 7.1e-06 56.2 33 75.8


User provided reference genes

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