Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 0.0e+00 1350.9 707 100.0
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 0.0e+00 1350.9 707 100.0
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 3.8e-307 1057.7 715 82.0
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.8e-256 889.4 721 71.3
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 4.7e-241 838.2 702 68.5
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 3.0e-227 792.3 746 61.8
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 5.6e-218 761.5 704 64.2
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 5.2e-216 755.0 701 63.2
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 2.0e-215 753.1 720 61.2
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 8.4e-214 747.7 660 64.2
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 2.4e-213 746.1 714 60.6
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 2.7e-212 742.7 705 61.0
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 1.6e-209 733.4 701 62.5
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.5e-207 726.9 711 61.0
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 2.4e-205 719.5 720 60.3
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 9.3e-205 717.6 717 60.9
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.5e-204 715.7 711 59.6
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.3e-203 713.0 720 58.8
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 8.7e-203 711.1 700 60.6
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 3.3e-202 709.1 707 61.2
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 3.3e-202 709.1 712 61.9
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.6e-201 706.8 721 59.8
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 6.2e-201 704.9 679 62.0
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 1.1e-200 704.1 717 60.0
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.4e-200 703.0 718 58.5
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.3e-200 701.8 721 59.6
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.3e-198 697.2 684 61.3
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.9e-198 696.0 688 61.3
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 8.4e-198 694.5 684 61.1
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.9e-197 693.3 667 60.3
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.9e-197 693.3 731 56.8
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 4.2e-197 692.2 716 58.1
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 9.3e-197 691.0 667 59.7
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 1.2e-196 690.6 640 64.2
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 3.5e-196 689.1 661 60.4
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.0e-195 687.6 704 59.7
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.0e-195 686.0 694 58.2
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.9e-195 685.6 667 60.0
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.4e-192 676.4 694 58.9
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 6.9e-192 674.9 707 58.1
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.5e-191 673.7 717 57.6
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 2.6e-191 672.9 683 59.4
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 5.8e-191 671.8 718 57.4
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.5e-189 666.4 685 56.8
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.6e-188 663.7 701 57.5
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 8.7e-187 657.9 717 55.6
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 2.2e-185 653.3 643 59.6
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 3.1e-184 649.4 703 56.2
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.6e-183 646.4 711 55.1
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 1.3e-182 644.0 695 55.8
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 1.3e-182 644.0 714 54.5
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 6.5e-182 641.7 714 55.2
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 8.5e-182 641.3 692 56.6
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 8.5e-182 641.3 729 54.6
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 9.4e-181 637.9 726 55.1
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 2.3e-179 633.3 709 54.7
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 1.1e-178 630.9 717 55.9
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 1.9e-178 630.2 660 57.0
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 3.7e-177 625.9 618 59.9
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 6.3e-177 625.2 695 55.5
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.8e-176 623.6 649 57.0
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 3.4e-175 619.4 607 58.5
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 1.9e-173 613.6 708 54.1
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 2.1e-172 610.1 671 56.2
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.7e-172 609.8 742 52.3
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 8.8e-171 604.7 678 55.8
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 8.2e-169 598.2 663 54.9
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.1e-168 597.8 724 53.0
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 2.4e-168 596.7 707 53.9
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.6e-167 593.2 664 54.5
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 5.9e-167 592.0 660 55.3
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 7.7e-167 591.7 704 51.8
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.1e-165 587.8 622 56.9
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 2.5e-165 586.6 649 55.0
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.8e-163 580.5 776 48.1
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 7.4e-162 575.1 652 54.1
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 1.3e-161 574.3 696 53.6
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 2.2e-161 573.5 554 61.7
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.2e-159 567.8 695 52.5
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.8e-155 553.9 741 49.3
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 2.6e-154 550.1 693 51.1
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.8e-153 545.8 693 51.2
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 1.6e-148 530.8 583 55.7
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 4.4e-146 522.7 574 55.4
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.1e-141 508.1 662 52.0
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 5.7e-138 495.7 710 47.5
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.4e-136 491.1 652 49.1
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.2e-135 488.0 695 47.9
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.0e-131 474.9 532 54.1
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 8.9e-131 471.9 731 46.5
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 5.8e-130 469.2 669 45.9
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 2.0e-127 460.7 695 47.8
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 7.8e-127 458.8 699 44.5
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.8e-124 450.3 658 48.0
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 6.2e-124 449.1 654 46.3
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 1.8e-123 447.6 572 52.6
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 1.3e-121 441.4 642 45.6
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 3.2e-120 436.8 769 42.7
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 2.7e-119 433.7 619 46.5
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 3.5e-119 433.3 644 46.3
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 6.0e-119 432.6 678 44.1
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 2.3e-118 430.6 625 46.7
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 9.9e-114 415.2 729 42.5
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 3.5e-111 406.8 414 62.1
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 7.8e-111 405.6 504 53.0
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.3e-110 404.8 645 44.3
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 1.4e-107 394.8 518 49.6
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 5.2e-107 392.9 650 43.8
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 5.2e-107 392.9 650 43.8
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 2.2e-105 387.5 564 45.7
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 4.9e-105 386.3 567 45.9
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 3.9e-102 376.7 296 66.9
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 5.4e-96 356.3 614 44.6
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.2e-89 334.3 189 87.8
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 2.2e-81 307.8 509 43.0
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 7.1e-80 302.8 268 62.7
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 1.9e-77 294.7 511 42.9
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 5.3e-67 260.0 221 57.9
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.6e-55 221.9 258 49.6
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 2.8e-52 211.1 475 34.7
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 3.7e-52 210.7 552 32.4
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 1.7e-49 201.8 171 64.9
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 2.5e-48 198.0 147 72.1
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 3.7e-44 184.1 220 54.1
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.4e-43 181.4 222 41.0
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 5.3e-43 180.3 300 45.0
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 3.5e-42 177.6 121 70.2
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 6.5e-41 173.3 169 56.2
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 3.4e-37 161.0 158 60.8
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 4.4e-37 160.6 415 34.7
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.3e-36 159.1 232 44.4
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 5.3e-35 153.7 177 53.7
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 3.5e-34 151.0 150 56.7
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 4.2e-32 144.1 126 64.3
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 5.4e-27 127.1 441 30.2
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 4.2e-24 117.5 140 48.6
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 4.7e-23 114.0 73 68.5
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 3.7e-20 104.4 190 41.1
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 8.6e-17 93.2 113 49.6
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 5.6e-16 90.5 73 54.8
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 9.5e-16 89.7 141 44.7
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.1e-15 88.6 72 58.3
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 2.0e-13 82.0 62 64.5
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 7.5e-13 80.1 65 63.1
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 6.4e-12 77.0 129 41.9
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 1.2e-10 72.8 197 31.0
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 3.0e-09 68.2 42 73.8
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 5.6e-08 63.9 55 58.2
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 5.6e-08 63.9 43 72.1
ECA238G1534 Erigeron canadensis HOM05D004806 ORTHO05D005397 3.6e-07 61.2 71 53.5
MD12G1168400 Malus domestica HOM05D004806 ORTHO05D005397 3.6e-07 61.2 29 96.6
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 4.7e-07 60.8 55 50.9


User provided reference genes

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