Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 4.1e-168 594.7 317 100.0
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 4.1e-168 594.7 317 100.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.1e-144 515.4 318 85.8
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.2e-143 513.5 318 85.5
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 9.4e-141 503.8 318 85.5
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 5.2e-139 498.0 318 84.9
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.9e-137 491.5 318 81.4
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.9e-133 479.6 362 72.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.9e-133 479.6 317 80.4
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.9e-133 479.6 317 80.4
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.2e-132 476.9 319 79.6
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.6e-132 476.5 317 79.8
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.6e-132 475.3 316 78.5
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.3e-131 472.6 317 79.2
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 6.8e-131 471.1 319 79.3
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.2e-130 470.3 318 78.3
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.5e-130 469.9 317 78.2
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.0e-130 469.5 318 78.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.6e-130 469.2 317 77.9
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.6e-130 469.2 317 77.6
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 2.6e-130 469.2 318 77.0
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 5.7e-130 468.0 317 76.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 7.5e-130 467.6 317 78.2
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 7.5e-130 467.6 318 76.7
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 7.5e-130 467.6 317 78.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 9.8e-130 467.2 317 77.6
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 9.8e-130 467.2 317 77.0
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 9.8e-130 467.2 318 76.7
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.3e-129 466.8 317 78.9
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.3e-129 466.8 317 77.0
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.7e-129 466.5 317 78.2
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.9e-129 465.7 318 77.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 3.7e-129 465.3 318 76.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 6.4e-129 464.5 318 76.1
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.8e-128 463.0 317 77.6
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 3.2e-128 462.2 318 75.8
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 4.1e-128 461.8 318 77.4
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.1e-128 461.8 318 76.7
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 5.4e-128 461.5 319 76.5
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 7.0e-128 461.1 317 77.3
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 9.2e-128 460.7 317 77.9
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.2e-127 460.3 318 77.0
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 1.6e-127 459.9 317 78.5
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.0e-127 459.5 317 77.6
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.7e-127 459.1 318 75.5
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.3e-126 456.8 317 75.4
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.3e-126 456.8 317 77.3
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 3.0e-126 455.7 317 75.4
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.9e-126 455.3 317 76.7
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 3.9e-126 455.3 317 77.3
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 6.6e-126 454.5 317 76.7
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.9e-125 453.0 317 74.8
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.9e-125 453.0 317 76.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.9e-125 453.0 317 76.7
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 3.3e-125 452.2 317 76.0
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 9.5e-125 450.7 317 75.7
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.0e-123 447.2 318 75.2
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 4.0e-123 445.3 318 74.8
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 4.0e-123 445.3 317 73.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.2e-122 443.7 317 76.3
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.6e-122 442.6 318 75.5
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 7.5e-122 441.0 317 75.1
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 9.8e-122 440.7 317 73.8
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.2e-121 439.5 317 72.6
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.7e-121 438.7 318 73.9
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.7e-121 438.7 316 72.5
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 3.7e-121 438.7 314 74.2
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 6.4e-121 438.0 317 73.5
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 8.3e-121 437.6 317 72.2
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 4.1e-120 435.3 317 73.8
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 5.4e-120 434.9 317 73.2
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 7.0e-120 434.5 317 73.2
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.2e-119 433.7 317 73.2
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 6.0e-119 431.4 317 72.6
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 7.8e-119 431.0 317 73.2
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.7e-118 429.9 319 73.0
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 5.0e-118 428.3 317 72.6
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.5e-117 426.8 318 72.0
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.5e-117 426.0 318 70.8
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 3.3e-117 425.6 317 71.3
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 7.3e-117 424.5 317 71.3
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.2e-116 423.7 317 72.2
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.6e-116 423.3 319 74.6
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.7e-116 421.8 317 70.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 4.7e-116 421.8 317 72.2
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.2e-116 421.4 352 64.8
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 2.3e-115 419.5 318 70.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 6.8e-115 417.9 317 69.4
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 6.8e-115 417.9 318 70.1
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 8.9e-115 417.5 319 71.8
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.0e-114 416.4 317 69.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 4.9e-113 411.8 318 69.2
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.4e-112 409.5 285 77.9
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.1e-111 406.4 292 74.3
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.5e-111 405.6 317 68.1
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 4.6e-111 405.2 317 67.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 7.8e-111 404.4 281 75.8
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.1e-109 400.6 304 71.7
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 3.3e-109 399.1 318 68.6
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 9.5e-109 397.5 301 71.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.2e-108 397.1 256 83.2
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.1e-108 396.4 301 71.1
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 3.6e-108 395.6 301 70.8
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 4.7e-108 395.2 286 73.1
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 6.2e-108 394.8 321 67.0
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 5.2e-107 391.7 269 76.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.6e-106 389.4 319 66.5
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 3.4e-106 389.0 280 73.9
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.9e-105 386.0 269 76.2
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-103 380.6 293 70.3
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 7.8e-103 377.9 293 69.3
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.4e-99 367.1 317 67.2
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.0e-98 363.2 263 73.0
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 9.9e-98 360.9 317 64.7
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 9.9e-98 360.9 242 80.2
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.3e-97 360.5 317 63.4
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 4.6e-95 352.1 318 63.5
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 4.6e-95 352.1 319 61.4
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.0e-94 349.4 269 68.4
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.2e-92 341.7 230 79.6
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.3e-91 338.6 317 60.9
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.8e-84 315.5 317 56.8
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.1e-84 314.7 228 71.1
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.1e-76 290.0 391 49.1
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.8e-75 287.0 747 32.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 5.8e-74 282.0 320 50.6
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.5e-69 267.3 321 48.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 7.6e-66 255.0 312 49.7
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 6.1e-63 245.4 301 49.5
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 1.1e-61 241.1 181 76.8
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.3e-54 216.9 192 64.6
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.8e-54 214.9 150 79.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 6.5e-49 198.7 159 71.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.7e-47 193.4 274 48.9
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.8e-44 182.6 121 84.3
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.5e-40 171.0 128 76.6
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 5.5e-40 169.1 150 65.3
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.5e-37 161.0 115 65.2
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 4.4e-37 159.5 251 43.0
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.6e-34 151.0 310 35.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 5.9e-34 149.1 272 42.3
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 3.0e-30 136.7 91 74.7
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.8e-30 135.6 110 65.5
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.3e-28 131.3 166 54.2
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.7e-26 123.6 135 58.5
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.3e-25 121.3 111 64.9
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 3.8e-25 119.8 99 64.6
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 3.8e-25 119.8 93 66.7
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 4.7e-23 112.8 89 64.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.8e-20 103.6 58 89.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.9e-16 90.9 394 25.1
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.2e-14 82.8 62 72.6
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.4e-13 79.7 91 53.8
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.2e-07 61.6 129 35.7
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.1e-06 58.5 42 69.0
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 1.1e-06 58.5 90 40.0


User provided reference genes

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