Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 7.4e-39 163.3 77 100.0
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 2.1e-30 135.2 68 92.6
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 6.9e-13 77.0 46 71.7
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 9.1e-13 76.6 46 69.6
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-12 76.3 46 69.6
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-12 76.3 46 69.6
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-12 76.3 46 69.6
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.2e-12 76.3 46 69.6
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 2.0e-12 75.5 46 67.4
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 5.9e-12 73.9 46 65.2
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.9e-12 73.9 46 65.2
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 5.9e-12 73.9 44 68.2
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 1.7e-11 72.4 46 63.0
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.7e-11 72.4 46 65.2
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.7e-11 72.4 46 65.2
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 2.2e-11 72.0 44 65.9
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.9e-11 71.6 49 61.2
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.8e-11 71.2 46 63.0
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.8e-11 71.2 46 63.0
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 5.0e-11 70.9 46 65.2
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 5.0e-11 70.9 44 65.9
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 5.0e-11 70.9 45 66.7
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 6.5e-11 70.5 49 61.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 6.5e-11 70.5 46 63.0
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-10 69.7 44 63.6
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.1e-10 69.7 46 58.7
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 1.1e-10 69.7 38 73.7
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.1e-10 69.7 42 69.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.1e-10 69.7 42 69.0
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.1e-10 69.7 46 60.9
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.1e-10 69.7 46 65.2
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.4e-10 69.3 46 65.2
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.4e-10 69.3 44 63.6
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.4e-10 69.3 44 63.6
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.4e-10 69.3 46 63.0
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.9e-10 68.9 46 63.0
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.9e-10 68.9 44 65.9
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.9e-10 68.9 43 67.4
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.5e-10 68.6 38 71.1
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.5e-10 68.6 45 62.2
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.2e-10 68.2 46 58.7
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.2e-10 68.2 44 61.4
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 4.2e-10 67.8 36 69.4
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 5.5e-10 67.4 46 58.7
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 5.5e-10 67.4 43 62.8
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 5.5e-10 67.4 46 63.0
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 5.5e-10 67.4 46 56.5
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 5.5e-10 67.4 44 65.9
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 7.2e-10 67.0 44 65.9
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 7.2e-10 67.0 38 68.4
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 7.2e-10 67.0 47 61.7
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.2e-09 66.2 45 60.0
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.2e-09 66.2 43 60.5
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 1.2e-09 66.2 46 58.7
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.2e-09 66.2 42 64.3
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.2e-09 66.2 47 61.7
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.2e-09 66.2 44 61.4
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.2e-09 66.2 43 60.5
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.2e-09 66.2 43 60.5
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 1.2e-09 66.2 43 60.5
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 1.6e-09 65.9 44 63.6
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 2.1e-09 65.5 38 65.8
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 2.1e-09 65.5 38 68.4
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.7e-09 65.1 46 63.0
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 2.7e-09 65.1 44 59.1
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 2.7e-09 65.1 46 54.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.7e-09 65.1 43 55.8
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 2.7e-09 65.1 46 60.9
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 3.6e-09 64.7 46 54.3
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 3.6e-09 64.7 38 68.4
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.6e-09 64.7 43 60.5
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 4.6e-09 64.3 43 55.8
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 4.6e-09 64.3 46 54.3
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 4.6e-09 64.3 43 60.5
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 4.6e-09 64.3 44 56.8
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 4.6e-09 64.3 44 56.8
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 6.1e-09 63.9 43 60.5
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 6.1e-09 63.9 38 65.8
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 6.1e-09 63.9 46 54.3
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 7.9e-09 63.5 46 54.3
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 1.0e-08 63.2 44 61.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.0e-08 63.2 43 55.8
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.0e-08 63.2 46 52.2
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 1.4e-08 62.8 46 52.2
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.4e-08 62.8 57 52.6
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.4e-08 62.8 46 63.0
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.8e-08 62.4 44 59.1
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.8e-08 62.4 46 52.2
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.8e-08 62.4 46 52.2
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 2.3e-08 62.0 46 63.0
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 3.0e-08 61.6 46 52.2
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 3.9e-08 61.2 46 52.2
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.1e-07 59.7 46 56.5
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.1e-07 59.7 46 56.5
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 3.3e-07 58.2 49 53.1
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 4.4e-07 57.8 46 52.2
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 5.7e-07 57.4 46 52.2
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 7.4e-07 57.0 45 53.3
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 7.4e-07 57.0 46 58.7
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 7.4e-07 57.0 46 58.7
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 7.4e-07 57.0 40 52.5
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.4e-07 57.0 72 40.3
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 9.7e-07 56.6 40 52.5
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 1.7e-06 55.8 40 52.5
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.7e-06 55.8 46 50.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 3.7e-06 54.7 43 53.5
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 4.8e-06 54.3 43 53.5
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 4.8e-06 54.3 34 64.7
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 8.2e-06 53.5 45 48.9


User provided reference genes

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