Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 5.0e-70 267.7 140 100.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.8e-59 232.6 130 93.1
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.7e-55 218.8 129 86.8
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.0e-54 216.9 130 85.4
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 5.6e-53 211.1 130 85.4
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 2.1e-52 209.1 129 82.9
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 6.2e-52 207.6 130 80.8
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.1e-51 206.8 127 81.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.1e-51 206.8 127 81.9
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.4e-51 206.5 129 81.4
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.8e-51 206.1 130 81.5
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.3e-51 205.7 130 82.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 4.0e-51 204.9 129 80.6
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 5.2e-51 204.5 127 81.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 6.8e-51 204.1 130 78.5
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 8.9e-51 203.8 129 82.2
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 8.9e-51 203.8 127 81.1
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.5e-50 203.0 129 82.2
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.5e-50 203.0 130 80.8
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.5e-50 203.0 130 80.0
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 3.4e-50 201.8 129 81.4
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 3.4e-50 201.8 130 80.0
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 4.4e-50 201.4 130 80.0
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 7.6e-50 200.7 129 80.6
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 9.9e-50 200.3 129 79.8
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.3e-49 199.9 129 81.4
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.7e-49 199.5 130 78.5
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.7e-49 199.5 128 80.5
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.7e-49 199.5 130 80.0
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 3.8e-49 198.4 130 79.2
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 3.8e-49 198.4 129 79.1
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 3.8e-49 198.4 129 79.1
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.9e-49 198.0 125 82.4
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 6.4e-49 197.6 130 76.9
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 8.4e-49 197.2 130 77.7
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.1e-48 196.8 130 76.9
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 2.4e-48 195.7 130 77.7
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.4e-48 195.7 130 76.9
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 3.2e-48 195.3 130 74.6
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 4.1e-48 194.9 129 78.3
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 4.1e-48 194.9 130 75.4
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 5.4e-48 194.5 130 75.4
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 7.1e-48 194.1 130 79.2
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 9.2e-48 193.7 130 76.2
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.2e-47 193.4 130 76.9
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.6e-47 193.0 129 76.7
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.1e-47 192.6 130 76.9
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 2.1e-47 192.6 129 76.7
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.1e-47 192.6 129 73.6
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 2.7e-47 192.2 130 77.7
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 3.5e-47 191.8 127 79.5
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.0e-46 190.3 130 76.2
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.3e-46 189.9 130 75.4
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.3e-46 189.1 126 78.6
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.3e-46 189.1 128 75.0
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.3e-46 189.1 130 76.2
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-46 189.1 130 76.2
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 2.3e-46 189.1 130 76.2
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 2.3e-46 189.1 130 76.2
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.0e-46 188.7 126 78.6
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 3.0e-46 188.7 128 74.2
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 3.9e-46 188.3 130 73.1
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.6e-46 187.6 130 73.1
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 8.6e-46 187.2 127 76.4
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.1e-45 186.8 124 77.4
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.5e-45 186.4 127 75.6
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.9e-45 186.0 130 73.8
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 3.3e-45 185.3 128 74.2
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 4.3e-45 184.9 130 73.8
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 5.6e-45 184.5 130 72.3
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 5.6e-45 184.5 128 73.4
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 9.6e-45 183.7 130 73.8
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 9.6e-45 183.7 130 71.5
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 2.1e-44 182.6 129 72.9
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 2.8e-44 182.2 130 73.8
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.8e-44 182.2 130 73.8
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-43 180.3 130 72.3
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.1e-43 180.3 128 72.7
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 1.1e-43 180.3 130 72.3
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-43 179.9 130 73.1
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-43 179.9 130 73.1
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-43 179.9 130 73.1
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.4e-43 179.9 130 73.1
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.4e-43 179.9 130 71.5
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.8e-43 179.5 130 71.5
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 2.4e-43 179.1 126 73.0
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-43 179.1 130 72.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-43 179.1 130 73.1
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 3.1e-43 178.7 130 72.3
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 3.1e-43 178.7 130 72.3
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.1e-43 178.7 128 73.4
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 3.1e-43 178.7 125 74.4
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 3.1e-43 178.7 129 72.9
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 4.0e-43 178.3 127 71.7
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 4.0e-43 178.3 130 71.5
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 6.9e-43 177.6 130 70.8
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 6.9e-43 177.6 130 70.8
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 6.9e-43 177.6 130 70.8
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.9e-43 177.6 130 70.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.9e-43 177.6 117 76.1
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 6.9e-43 177.6 130 71.5
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 8.9e-43 177.2 130 72.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.9e-43 177.2 140 67.9
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 8.9e-43 177.2 128 73.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 8.9e-43 177.2 116 78.4
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.0e-42 176.0 125 72.8
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.0e-42 176.0 129 70.5
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.6e-42 175.6 130 70.0
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 4.4e-42 174.9 130 71.5
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.8e-42 174.5 127 70.9
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.3e-41 173.3 130 70.8
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.3e-41 173.3 119 77.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.3e-41 173.3 114 78.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.7e-41 172.9 130 70.0
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 2.2e-41 172.6 128 68.8
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 8.4e-41 170.6 128 68.8
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.4e-41 170.6 127 72.4
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.9e-40 169.5 127 69.3
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.4e-40 169.1 127 69.3
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 3.5e-39 165.2 128 69.5
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.1e-37 160.2 127 66.9
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 9.6e-37 157.1 128 65.6
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 2.8e-36 155.6 127 65.4
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 5.8e-34 147.9 127 61.4
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 7.1e-32 141.0 127 59.1
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.1e-27 127.1 128 53.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.4e-27 126.7 137 52.6
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.4e-27 125.9 128 52.3
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 9.0e-27 124.0 129 58.1
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 3.4e-26 122.1 130 56.9
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.0e-22 109.0 126 50.0
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.0e-22 109.0 126 50.0
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-21 106.7 78 70.5
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.9e-21 106.3 114 57.0
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 7.4e-21 104.4 97 58.8
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.7e-20 102.1 103 55.3
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-18 96.7 64 76.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 6.0e-15 84.7 104 50.0
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 3.3e-13 79.0 130 41.5
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 9.6e-13 77.4 56 71.4
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 3.7e-12 75.5 59 64.4
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 6.3e-12 74.7 49 75.5
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 2.6e-10 69.3 50 70.0
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.4e-10 68.9 48 77.1
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.8e-09 65.5 63 55.6
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.0e-06 57.4 68 48.5
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 3.0e-06 55.8 68 47.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.7e-06 54.7 47 61.7


User provided reference genes

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