Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20714 Davidia involucrata HOM05D003149 ORTHO05D003529 2.0e-127 459.1 233 100.0
Dinv29078 Davidia involucrata HOM05D003149 ORTHO05D003529 1.6e-28 130.6 155 51.0
Rhsim05G0164400 Rhododendron simsii HOM05D003149 ORTHO05D003529 3.1e-16 89.7 150 40.0
vmacro19582 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 5.9e-15 85.5 146 40.4
Actinidia03243 Actinidia chinensis HOM05D003149 ORTHO05D003529 1.0e-14 84.7 146 41.8
Lsat_1_v5_gn_0_14541 Lactuca sativa HOM05D003149 ORTHO05D003529 2.5e-13 80.1 146 36.3
Duzib106G1027 Durio zibethinus HOM05D003149 ORTHO05D003529 2.1e-12 77.0 131 38.2
CAN.G282.52 Capsicum annuum HOM05D003149 ORTHO05D003529 2.7e-12 76.6 151 34.4
Gohir.D10G121700 Gossypium hirsutum HOM05D003149 ORTHO05D003529 3.6e-12 76.3 135 35.6
Gorai.011G133800 Gossypium raimondii HOM05D003149 ORTHO05D003529 3.6e-12 76.3 135 35.6
Gohir.A10G145300 Gossypium hirsutum HOM05D003149 ORTHO05D003529 6.1e-12 75.5 135 35.6
TWI36G0408 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 6.1e-12 75.5 137 35.8
Migut.F01844 Erythranthe guttata HOM05D003149 ORTHO05D003529 8.0e-12 75.1 179 34.1
HanXRQChr16g0511871 Helianthus annuus HOM05D003149 ORTHO05D003529 1.0e-11 74.7 149 38.3
MSTRG.8193 Avicennia marina HOM05D003149 ORTHO05D003529 1.4e-11 74.3 157 35.7
Oeu001216.1 Olea europaea HOM05D003149 ORTHO05D003529 2.3e-11 73.6 151 37.7
CSS0012520 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 4.0e-11 72.8 166 34.9
Oeu034705.1 Olea europaea HOM05D003149 ORTHO05D003529 1.2e-10 71.2 155 35.5
Sc19g0002190 Simmondsia chinensis HOM05D003149 ORTHO05D003529 1.2e-10 71.2 51 68.6
Thecc.05G110700 Theobroma cacao HOM05D003149 ORTHO05D003529 2.0e-10 70.5 136 37.5
PGSC0003DMG401016399 Solanum tuberosum HOM05D003149 ORTHO05D003529 4.4e-10 69.3 146 35.6
CANSAT01G1641 Cannabis sativa HOM05D003149 ORTHO05D003529 7.5e-10 68.6 148 33.8
SGA_v2.0_scaffold340G49312 Striga asiatica HOM05D003149 ORTHO05D003529 7.5e-10 68.6 204 33.3
TWI18G1429 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 7.5e-10 68.6 137 32.8
VMungo0464G1154 Vigna mungo HOM05D003149 ORTHO05D003529 7.5e-10 68.6 145 34.5
Sc09g0001350 Simmondsia chinensis HOM05D003149 ORTHO05D003529 9.7e-10 68.2 144 35.4
Sopen01g003730 Solanum pennellii HOM05D003149 ORTHO05D003529 1.7e-09 67.4 150 34.7
SGA_v2.0_scaffold122G33204 Striga asiatica HOM05D003149 ORTHO05D003529 1.7e-09 67.4 157 34.4
VMungo0464G1958 Vigna mungo HOM05D003149 ORTHO05D003529 1.7e-09 67.4 141 34.8
ClCG09G009140 Citrullus lanatus HOM05D003149 ORTHO05D003529 2.2e-09 67.0 164 31.7
Phvul.004G067500 Phaseolus vulgaris HOM05D003149 ORTHO05D003529 3.7e-09 66.2 148 31.1
Solyc01g008190.4 Solanum lycopersicum HOM05D003149 ORTHO05D003529 3.7e-09 66.2 149 32.9
MBI08_g01803_MAGBIO Magnolia biondii HOM05D003149 ORTHO05D003529 6.3e-09 65.5 150 33.3
Phvul.004G067600 Phaseolus vulgaris HOM05D003149 ORTHO05D003529 1.1e-08 64.7 145 32.4
CDE08G0700 Ceratophyllum demersum HOM05D003149 ORTHO05D003529 1.4e-08 64.3 143 35.7
Nn1g09739 Nelumbo nucifera HOM05D003149 ORTHO05D003529 1.4e-08 64.3 146 33.6
Atru.chr12.1650 Acer truncatum HOM05D003149 ORTHO05D003529 4.1e-08 62.8 129 34.9
CDE02G3933 Ceratophyllum demersum HOM05D003149 ORTHO05D003529 4.1e-08 62.8 146 31.5
Nitab4.5_0000069g0250 Nicotiana tabacum HOM05D003149 ORTHO05D003529 4.1e-08 62.8 94 39.4
Cfa015771 Carpinus fangiana HOM05D003149 ORTHO05D003529 5.3e-08 62.4 143 34.3
TAR362G1330 Trochodendron aralioides HOM05D003149 ORTHO05D003529 5.3e-08 62.4 149 34.2
Haze_00730 Corylus avellana HOM05D003149 ORTHO05D003529 7.0e-08 62.0 143 31.5
Lalb_Chr24g0403041 Lupinus albus HOM05D003149 ORTHO05D003529 7.0e-08 62.0 146 33.6
AUR62030021 Chenopodium quinoa HOM05D003149 ORTHO05D003529 9.1e-08 61.6 165 32.7
Lalb_Chr14g0364251 Lupinus albus HOM05D003149 ORTHO05D003529 9.1e-08 61.6 144 34.0
Hma1.2p1_1961F.1_g309090 Hydrangea macrophylla HOM05D003149 ORTHO05D003529 1.2e-07 61.2 129 36.4
Lalb_Chr21g0317031 Lupinus albus HOM05D003149 ORTHO05D003529 1.2e-07 61.2 133 36.1
Cpa.g.sc71.18 Carica papaya HOM05D003149 ORTHO05D003529 1.6e-07 60.8 101 39.6
Medtr7g084890 Medicago truncatula HOM05D003149 ORTHO05D003529 2.0e-07 60.5 135 31.1
TWI75G0623 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 2.0e-07 60.5 133 30.8
HPP92_004557 Vanilla planifolia HOM05D003149 ORTHO05D003529 2.0e-07 60.5 143 35.0
Ah.06g195300 Amaranthus hybridus HOM05D003149 ORTHO05D003529 2.7e-07 60.1 134 34.3
arahy.Tifrunner.gnm1.ann1.H0MJIY Arachis hypogaea HOM05D003149 ORTHO05D003529 2.7e-07 60.1 79 41.8
Potri.010G180200 Populus trichocarpa HOM05D003149 ORTHO05D003529 2.7e-07 60.1 159 29.6
Ca_08244_v3 Cicer arietinum L. HOM05D003149 ORTHO05D003529 4.5e-07 59.3 142 31.7
Dinv22647 Davidia involucrata HOM05D003149 ORTHO05D003529 4.5e-07 59.3 151 32.5
MBI11_g35029_MAGBIO Magnolia biondii HOM05D003149 ORTHO05D003529 4.5e-07 59.3 81 42.0
CiPaw.07G085200 Carya illinoinensis HOM05D003149 ORTHO05D003529 5.9e-07 58.9 136 33.1
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 5.9e-07 58.9 143 31.5
Manes.04G040400 Manihot esculenta HOM05D003149 ORTHO05D003529 5.9e-07 58.9 43 67.4
RcHm_v2.0_Chr4g0407911 Rosa chinensis HOM05D003149 ORTHO05D003529 5.9e-07 58.9 136 33.1
Sed0006305 Sechium edule HOM05D003149 ORTHO05D003529 5.9e-07 58.9 144 30.6
CiPaw.02G056200 Carya illinoinensis HOM05D003149 ORTHO05D003529 1.3e-06 57.8 152 30.3
Ciclev10012589m.g Citrus clementina HOM05D003149 ORTHO05D003529 1.3e-06 57.8 43 62.8
MELO3C012775.2 Cucumis melo HOM05D003149 ORTHO05D003529 1.3e-06 57.8 139 31.7
arahy.Tifrunner.gnm1.ann1.U2W2LI Arachis hypogaea HOM05D003149 ORTHO05D003529 1.7e-06 57.4 79 41.8
FAN07G0836 Fragaria x ananassa HOM05D003149 ORTHO05D003529 1.7e-06 57.4 121 34.7
Glyma.16G149700 Glycine max HOM05D003149 ORTHO05D003529 1.7e-06 57.4 144 34.0
Gohir.A09G168900 Gossypium hirsutum HOM05D003149 ORTHO05D003529 2.2e-06 57.0 43 62.8
Gohir.D09G164600 Gossypium hirsutum HOM05D003149 ORTHO05D003529 2.2e-06 57.0 43 62.8
Gorai.006G186400 Gossypium raimondii HOM05D003149 ORTHO05D003529 2.2e-06 57.0 43 62.8
Potri.007G126300 Populus trichocarpa HOM05D003149 ORTHO05D003529 2.2e-06 57.0 83 41.0
SHI29168 Sapria himalayana HOM05D003149 ORTHO05D003529 2.2e-06 57.0 40 65.0
Thecc.05G003000 Theobroma cacao HOM05D003149 ORTHO05D003529 2.2e-06 57.0 43 62.8
Glyma.16G149900 Glycine max HOM05D003149 ORTHO05D003529 2.9e-06 56.6 144 32.6
Psat0ss1917g0040 Pisum sativum HOM05D003149 ORTHO05D003529 2.9e-06 56.6 59 50.8
Cfa006218 Carpinus fangiana HOM05D003149 ORTHO05D003529 3.8e-06 56.2 43 60.5
Lj1g0025540 Lotus japonicus HOM05D003149 ORTHO05D003529 3.8e-06 56.2 150 29.3
Manes.11G117400 Manihot esculenta HOM05D003149 ORTHO05D003529 3.8e-06 56.2 68 44.1
Ciclev10021620m.g Citrus clementina HOM05D003149 ORTHO05D003529 5.0e-06 55.8 196 28.6
Duzib093G1636 Durio zibethinus HOM05D003149 ORTHO05D003529 5.0e-06 55.8 60 51.7
FvH4_4g11360 Fragaria vesca HOM05D003149 ORTHO05D003529 5.0e-06 55.8 121 33.9
Actinidia34620 Actinidia chinensis HOM05D003149 ORTHO05D003529 6.5e-06 55.5 138 34.8
ClCG11G001340 Citrullus lanatus HOM05D001722 ORTHO05D001910 6.5e-06 55.5 38 68.4
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 6.5e-06 55.5 41 63.4
Haze_04605 Corylus avellana HOM05D003149 ORTHO05D003529 6.5e-06 55.5 39 64.1
MELO3C004666.2 Cucumis melo HOM05D001722 ORTHO05D001910 6.5e-06 55.5 38 68.4
Peaxi162Scf00563g00312 Petunia axillaris HOM05D003149 ORTHO05D003529 6.5e-06 55.5 119 37.0
Sed0024915 Sechium edule HOM05D001722 ORTHO05D001910 6.5e-06 55.5 38 68.4
Atru.chr3.1569 Acer truncatum HOM05D003149 ORTHO05D003529 8.5e-06 55.1 43 62.8
Atru.chr3.1588 Acer truncatum HOM05D003149 ORTHO05D003529 8.5e-06 55.1 43 62.8
arahy.Tifrunner.gnm1.ann1.4L1T75 Arachis hypogaea HOM05D003149 ORTHO05D003529 8.5e-06 55.1 56 53.6
Potri.017G035200 Populus trichocarpa HOM05D003149 ORTHO05D003529 8.5e-06 55.1 91 39.6
TPR.G31054 Trifolium pratense HOM05D003149 ORTHO05D003529 8.5e-06 55.1 135 33.3
vmacro14059 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 8.5e-06 55.1 51 58.8


User provided reference genes

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