Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 5.5e-195 684.1 343 100.0
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.2e-151 539.3 343 79.0
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.3e-148 529.3 343 77.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.3e-143 513.5 343 75.2
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 3.3e-131 472.2 344 69.8
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.3e-130 470.3 343 70.6
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.3e-127 460.3 344 69.5
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.9e-127 458.4 344 67.2
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 3.2e-126 455.7 344 64.8
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.2e-125 453.8 343 69.4
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.1e-123 447.2 344 67.4
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.9e-123 446.4 344 66.3
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 2.8e-122 442.6 343 65.3
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 3.1e-121 439.1 346 66.5
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.0e-121 438.7 333 66.7
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 6.9e-121 438.0 344 64.8
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 3.4e-120 435.6 343 64.7
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 5.8e-120 434.9 345 65.5
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.2e-119 433.0 343 65.6
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.9e-119 431.8 345 65.5
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.9e-118 429.9 354 65.0
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.6e-117 426.8 259 83.8
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 3.5e-117 425.6 344 63.7
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 4.6e-117 425.2 343 63.8
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.0e-116 424.1 344 61.9
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.3e-116 422.9 344 64.0
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.0e-116 422.5 344 60.8
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.0e-116 422.5 344 60.8
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.9e-116 422.2 344 60.5
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.1e-115 420.6 343 63.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 3.3e-115 419.1 344 63.4
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 5.6e-115 418.3 346 67.3
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 8.2e-114 414.5 322 65.2
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.1e-113 412.5 344 64.2
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 3.1e-113 412.5 355 61.7
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 9.0e-113 411.0 336 61.0
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.0e-112 409.8 333 61.9
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.9e-111 406.0 344 60.8
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.8e-111 405.6 344 63.1
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 7.1e-110 401.4 345 61.4
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 7.1e-110 401.4 344 60.5
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.2e-109 400.6 344 57.8
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.0e-109 398.3 344 58.1
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 6.0e-109 398.3 345 59.7
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 6.0e-109 398.3 343 60.1
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 7.9e-109 397.9 345 62.9
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.3e-108 396.4 346 62.1
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.3e-108 396.4 344 57.6
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 4.3e-107 392.1 346 58.1
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 6.3e-106 388.3 328 59.5
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.8e-105 386.7 344 57.8
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.8e-105 386.7 344 57.8
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.5e-104 383.6 346 55.2
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.5e-104 383.6 291 68.7
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 4.5e-104 382.1 343 56.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 5.9e-104 381.7 346 55.5
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.7e-103 380.2 346 55.2
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 5.0e-103 378.6 344 57.0
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 6.5e-103 378.3 345 60.0
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 5.5e-102 375.2 346 54.9
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 7.2e-102 374.8 347 54.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 9.4e-102 374.4 317 62.1
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 9.4e-102 374.4 346 54.9
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 6.1e-101 371.7 346 54.6
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.0e-100 370.9 343 56.3
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.0e-100 370.9 343 56.6
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 1.1e-99 367.5 344 56.7
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 4.3e-99 365.5 338 55.0
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 5.7e-99 365.2 338 54.7
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 9.7e-99 364.4 335 57.6
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.8e-98 362.8 344 57.6
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 3.7e-98 362.5 339 53.1
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 3.7e-98 362.5 319 61.4
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 6.3e-98 361.7 338 58.3
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.4e-97 360.5 343 54.2
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.8e-97 360.1 344 54.9
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 3.1e-97 359.4 347 57.1
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.9e-97 358.2 319 60.8
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.5e-96 357.1 344 54.4
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.6e-96 356.3 346 55.2
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 1.7e-95 353.6 343 54.2
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 3.8e-95 352.4 343 52.8
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 3.8e-95 352.4 346 54.9
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 5.0e-95 352.1 344 55.5
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.9e-94 350.1 343 55.1
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.9e-94 350.1 343 51.9
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.5e-94 349.7 344 55.2
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 3.2e-94 349.4 343 52.5
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.2e-93 347.4 344 53.2
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 6.1e-93 345.1 343 52.2
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 7.9e-93 344.7 343 55.4
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.3e-92 343.2 344 52.0
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.3e-92 343.2 344 50.9
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.5e-91 340.5 346 54.3
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 4.4e-91 339.0 345 52.2
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 2.2e-90 336.7 343 51.0
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 3.7e-90 335.9 349 55.0
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 4.8e-90 335.5 307 58.0
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 8.2e-90 334.7 334 52.1
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 9.1e-89 331.3 304 56.6
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.6e-88 329.7 345 52.5
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 3.5e-88 329.3 343 51.0
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 4.5e-88 328.9 309 57.9
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.9e-88 328.6 337 54.0
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.9e-88 328.6 351 51.6
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.0e-87 327.8 307 57.0
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.0e-87 327.8 346 49.4
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.7e-87 327.0 292 56.8
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 5.0e-87 325.5 343 50.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.1e-86 324.3 343 48.1
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.2e-85 320.9 347 49.3
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 2.3e-84 316.6 344 51.5
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 3.9e-84 315.8 348 48.9
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.5e-83 313.9 344 51.7
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.0e-83 313.5 347 49.0
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 7.4e-83 311.6 348 48.3
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 8.2e-82 308.1 291 57.7
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.8e-81 307.0 344 51.2
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 2.4e-81 306.6 344 49.4
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.1e-81 306.2 341 48.4
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 3.1e-81 306.2 344 48.8
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 4.5e-80 302.4 344 49.4
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 3.8e-79 299.3 342 49.7
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 5.0e-79 298.9 343 47.8
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.5e-78 296.6 343 47.8
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.4e-76 290.8 334 51.8
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 5.2e-76 288.9 348 46.3
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 2.4e-73 280.0 303 49.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.5e-70 270.0 332 43.4
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 8.8e-68 261.5 326 45.7
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.7e-66 256.1 199 65.3
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.7e-63 247.3 309 44.7
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 3.3e-62 243.0 291 46.4
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 9.5e-62 241.5 324 44.8
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.8e-61 240.0 333 42.3
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.8e-57 227.3 343 40.8
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.6e-55 218.8 137 73.7
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.3e-52 210.3 240 47.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 4.0e-52 209.5 342 39.5
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.5e-51 207.6 137 70.8
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.7e-50 203.0 129 72.1
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.4e-49 201.1 211 46.4
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 5.0e-47 192.6 296 42.6
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 4.6e-40 169.5 335 38.2
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 2.9e-34 150.2 103 66.0
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.7e-26 124.4 133 50.4
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 5.6e-14 82.8 211 29.9
Actinidia19336 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.5e-11 73.2 72 48.6
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 2.2e-10 70.9 265 25.3
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.2e-09 67.0 39 82.1
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 7.1e-09 65.9 206 29.6


User provided reference genes

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