Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.2e-246 854.4 467 100.0
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 5.2e-180 634.8 466 72.3
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 5.2e-180 634.8 466 72.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.2e-171 607.1 473 70.4
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 9.6e-166 587.4 480 67.3
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.8e-165 585.9 474 67.9
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 9.3e-161 570.9 480 65.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.1e-160 569.7 482 64.7
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 7.3e-158 561.2 472 65.9
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.8e-157 559.3 475 63.2
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.8e-157 559.3 475 63.4
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 6.2e-157 558.1 472 63.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 9.3e-153 544.3 469 63.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 2.1e-152 543.1 476 61.6
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.3e-151 540.4 471 63.3
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 6.7e-151 538.1 470 62.3
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.1e-150 537.3 481 63.2
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.7e-149 532.3 472 62.5
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 6.2e-149 531.6 476 62.0
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 3.1e-148 529.3 475 61.7
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.0e-148 528.9 473 61.3
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.2e-147 527.3 472 61.9
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.0e-146 524.2 473 63.0
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.7e-146 523.5 470 60.2
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.0e-144 515.0 463 59.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.0e-143 514.2 474 60.3
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 6.7e-143 511.5 475 60.2
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.1e-142 510.8 473 60.3
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.5e-142 510.4 472 58.5
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.9e-142 510.0 472 60.8
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 4.3e-142 508.8 473 59.8
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 5.7e-142 508.4 472 59.5
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 7.4e-142 508.1 471 61.8
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 4.8e-141 505.4 472 60.2
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 3.1e-140 502.7 473 59.4
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 4.1e-140 502.3 486 57.0
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 5.3e-140 501.9 473 58.4
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 5.3e-140 501.9 542 55.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.2e-139 500.7 471 58.4
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.5e-139 500.4 472 58.7
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 2.0e-139 500.0 477 60.0
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 3.4e-139 499.2 465 58.5
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 4.5e-139 498.8 476 60.7
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.6e-139 498.0 471 58.2
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 2.2e-138 496.5 474 58.6
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.5e-138 495.0 471 57.3
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 7.9e-136 488.0 476 57.1
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.1e-135 485.3 471 59.9
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.5e-134 483.8 470 56.4
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.9e-134 483.4 472 59.3
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.5e-134 483.0 501 54.1
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 3.3e-134 482.6 599 48.4
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.7e-134 481.9 470 56.4
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 7.4e-134 481.5 476 57.4
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.3e-133 480.7 471 55.8
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 8.2e-133 478.0 470 58.7
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 6.9e-132 474.9 473 57.3
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-131 474.2 469 55.4
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 5.0e-130 468.8 473 57.1
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.9e-129 466.8 480 55.2
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-125 453.8 483 54.9
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 3.7e-125 452.6 468 55.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.1e-124 451.1 504 52.4
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.1e-124 451.1 473 56.0
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.8e-124 450.3 471 54.8
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 3.1e-124 449.5 471 54.6
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.1e-124 449.1 479 54.9
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 6.5e-122 441.8 484 54.5
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.2e-121 439.5 472 54.4
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 5.5e-121 438.7 479 55.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 3.6e-120 436.0 484 56.4
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.9e-120 434.9 478 50.8
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.1e-118 431.0 466 54.7
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 2.0e-118 430.3 481 52.6
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 4.4e-118 429.1 470 52.3
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.4e-118 428.3 433 55.9
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 9.7e-118 427.9 470 51.7
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.3e-117 427.6 477 50.3
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.3e-117 427.6 479 52.2
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.2e-117 426.8 479 52.0
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.8e-116 423.7 490 53.9
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 4.1e-116 422.5 481 52.6
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-115 420.6 468 53.2
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.0e-115 420.2 526 48.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 4.5e-115 419.1 485 51.3
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 7.7e-115 418.3 492 49.0
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.0e-114 417.9 481 49.5
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.3e-114 417.5 416 54.3
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.7e-114 417.2 475 51.6
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.2e-114 416.8 476 50.6
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.9e-114 416.4 349 62.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 3.8e-114 416.0 471 49.9
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.5e-113 414.1 416 55.5
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 2.5e-113 413.3 471 49.7
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.2e-113 412.9 478 49.0
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.2e-113 412.5 476 49.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.5e-113 412.1 466 49.8
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 9.4e-113 411.4 467 52.9
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.2e-112 411.0 476 49.8
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-112 411.0 415 53.7
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.6e-112 410.6 412 54.1
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 4.7e-112 409.1 489 49.1
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.1e-112 408.7 435 53.8
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.4e-111 407.5 475 49.3
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 5.2e-111 405.6 468 50.0
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.6e-110 403.3 474 50.4
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 3.3e-110 402.9 467 50.3
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 7.4e-110 401.7 474 48.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 9.7e-110 401.4 482 47.9
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.7e-109 400.6 476 49.6
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.8e-109 399.1 476 48.7
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.3e-109 398.7 476 49.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.8e-108 397.1 476 48.3
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.1e-108 396.4 477 48.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 5.9e-107 392.1 482 48.1
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.5e-105 387.5 458 50.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 6.1e-104 382.1 471 47.1
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.3e-103 380.2 370 58.4
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 6.8e-103 378.6 313 62.6
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.0e-102 377.1 472 48.9
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.4e-102 376.3 477 46.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 5.4e-100 369.0 280 66.4
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.7e-99 366.7 469 48.4
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.0e-98 364.8 473 45.0
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 2.5e-97 360.1 472 46.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 9.4e-97 358.2 371 56.9
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.2e-95 352.4 371 50.4
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 4.4e-94 349.4 370 53.5
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 5.7e-94 349.0 463 45.8
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 9.1e-92 341.7 372 49.2
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 7.7e-91 338.6 345 56.2
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.7e-90 337.4 379 53.3
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 3.8e-90 336.3 371 54.4
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.8e-88 330.1 366 50.0
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 3.6e-88 329.7 433 46.9
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 8.0e-88 328.6 418 45.5
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.7e-82 310.8 366 46.4
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.3e-82 310.5 310 54.8
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.1e-81 308.1 453 43.3
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 4.7e-80 302.8 368 48.6
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 2.3e-79 300.4 369 47.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.4e-76 291.2 315 50.8
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 8.6e-74 282.0 213 67.6
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 9.5e-73 278.5 248 58.1
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.9e-69 266.2 320 44.7
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.4e-68 264.6 312 44.6
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 3.9e-66 256.5 369 39.6
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 9.5e-65 251.9 305 42.3
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.8e-64 250.4 364 43.4
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.1e-63 248.4 145 84.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 5.2e-63 246.1 347 43.5
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 6.4e-61 239.2 366 41.3
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.2e-60 236.9 386 37.3
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.0e-58 231.9 394 36.0
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.0e-58 230.3 274 43.8
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.2e-56 224.9 301 39.9
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.1e-52 211.8 203 57.1
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 7.8e-51 205.7 276 43.5
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.7e-50 204.5 206 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 6.6e-50 202.6 325 37.5
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 3.3e-49 200.3 194 56.2
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 7.3e-49 199.1 212 48.1
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.8e-47 194.5 258 45.7
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 7.4e-41 172.6 103 83.5
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.4e-39 168.3 140 61.4
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 6.7e-34 149.4 218 43.6
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 6.2e-32 142.9 240 37.9
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.2e-29 134.4 76 84.2
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.4e-28 131.7 107 62.6
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.9e-25 121.3 81 71.6
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.7e-25 119.8 234 36.8
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.8e-23 114.8 193 36.3
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 9.0e-23 112.5 203 36.0
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.0e-21 109.0 80 65.0
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.2e-19 102.1 87 60.9
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 7.4e-17 92.8 64 73.4
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.4e-15 88.6 130 43.8
GSVIVG01001936001 Vitis vinifera HOM05D003737 ORTHO05D004640 4.2e-12 77.0 73 58.9
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 3.0e-10 70.9 52 65.4
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 1.2e-06 58.9 217 26.7
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 3.4e-06 57.4 34 76.5


User provided reference genes

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