Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1580.8 773 100.0
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1364.7 773 85.8
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1362.4 773 85.6
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1352.8 772 85.1
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1307.4 791 82.0
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1297.3 805 80.5
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1283.9 777 81.1
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1272.3 773 80.6
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1269.2 775 79.9
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1263.8 785 79.7
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1247.6 775 79.6
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1247.6 773 79.9
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1246.9 776 79.1
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1244.6 766 81.3
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1237.6 774 78.7
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1237.2 773 78.8
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1236.1 774 78.7
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1234.6 777 78.0
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1233.0 775 78.7
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1231.1 774 78.4
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1229.9 766 78.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1222.2 775 77.0
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1220.7 775 76.8
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1218.4 774 77.3
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1218.4 773 77.9
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1216.1 775 76.6
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1213.7 774 76.4
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1201.0 773 75.9
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1180.2 774 75.2
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1173.3 786 74.8
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1172.5 771 75.9
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1172.1 773 74.9
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1171.4 775 75.1
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1169.1 775 74.7
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1168.3 777 74.8
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1160.2 774 73.9
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1156.7 775 73.9
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1156.7 775 73.9
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 0.0e+00 1155.6 759 76.0
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1151.3 775 73.7
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1151.3 774 73.6
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1147.5 778 73.1
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1146.7 776 73.5
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1144.8 775 73.8
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1143.6 775 72.8
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1142.9 775 72.9
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1142.1 777 73.4
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1140.6 775 73.4
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1139.0 780 73.6
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1138.6 776 73.2
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 0.0e+00 1138.3 768 72.5
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1136.3 771 71.7
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1136.3 775 73.4
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1135.2 771 71.7
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1132.5 772 72.3
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1131.7 776 73.3
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1130.9 781 72.3
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1128.6 776 72.9
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1125.2 776 72.4
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1122.8 783 71.6
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 0.0e+00 1121.7 776 73.6
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 782 71.2
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1104.4 778 71.9
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 0.0e+00 1103.6 809 67.0
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 0.0e+00 1102.4 775 70.7
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 0.0e+00 1102.0 813 68.3
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 784 70.7
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1097.0 777 70.0
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1095.9 772 70.1
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1093.6 779 71.6
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1092.8 758 72.8
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1088.9 772 70.2
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1087.0 778 69.0
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1086.6 775 70.2
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 0.0e+00 1085.5 722 76.9
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1083.9 775 68.9
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1083.2 776 69.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 775 70.1
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1079.3 774 69.6
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1076.6 769 68.1
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.3e-312 1073.5 768 68.9
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.1e-311 1072.0 778 67.9
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.1e-310 1068.1 772 68.8
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 4.0e-310 1067.8 779 69.3
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.5e-309 1065.8 778 67.5
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.5e-309 1065.8 774 68.6
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.6e-309 1065.1 782 68.7
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 9.9e-309 1063.1 746 72.3
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.3e-308 1062.8 776 66.6
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 2.2e-308 1062.0 778 68.3
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 4.9e-308 1060.8 778 67.9
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.9e-307 1058.9 778 69.5
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.9e-307 1058.9 780 68.8
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.9e-307 1058.9 780 68.6
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 5.4e-307 1057.4 796 66.7
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 3.5e-306 1054.7 778 67.6
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 5.1e-305 1050.8 778 67.6
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 4.0e-302 1041.2 773 66.1
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.8e-302 1040.4 776 68.2
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.2e-301 1039.6 773 66.5
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 4.4e-301 1037.7 776 66.2
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 4.4e-301 1037.7 776 66.0
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 7.6e-301 1036.9 776 66.1
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.2e-300 1035.4 776 67.3
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 4.9e-300 1034.2 771 66.0
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 8.4e-300 1033.5 783 66.8
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 9.2e-299 1030.0 767 67.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 774 66.7
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 1.6e-298 1029.2 776 66.8
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 4.3e-296 1021.1 778 66.3
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.1e-295 1018.8 776 66.8
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 4.7e-295 1017.7 777 65.1
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 6.2e-295 1017.3 755 67.0
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 8.1e-295 1016.9 766 65.5
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 8.1e-295 1016.9 736 72.6
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 2.4e-294 1015.4 775 64.9
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 3.1e-294 1015.0 777 65.3
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.2e-294 1014.2 777 66.3
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 6.4e-292 1007.3 776 64.4
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.7e-290 1001.9 775 64.1
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.3e-289 998.8 779 64.3
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 4.3e-288 994.6 883 60.9
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 6.4e-284 980.7 774 65.4
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 6.4e-284 980.7 781 63.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 3.5e-282 974.9 793 62.0
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 3.0e-281 971.8 788 65.0
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 4.8e-279 964.5 775 64.6
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.4e-278 963.0 781 63.0
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 5.6e-272 941.0 779 62.6
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 7.4e-272 940.6 762 63.5
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 8.4e-268 927.2 783 60.5
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.8e-263 912.1 781 59.8
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.4e-259 899.8 781 60.3
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.4e-259 899.8 764 61.5
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 7.2e-259 897.5 781 60.3
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.7e-247 859.8 735 59.7
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.5e-245 853.2 709 64.7
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.7e-239 833.2 688 62.9
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.1e-218 763.1 772 53.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 9.5e-195 684.5 776 47.0
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 7.3e-187 658.3 768 47.3
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.2e-178 630.9 784 44.3
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 1.1e-177 627.9 445 68.8
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 2.0e-176 623.6 799 45.1
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 5.4e-174 615.5 416 73.6
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 7.8e-173 611.7 819 43.0
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 3.1e-169 599.7 388 72.7
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 3.1e-169 599.7 388 72.7
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.9e-159 566.6 406 69.2
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 8.7e-156 555.1 739 41.7
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.6e-141 507.7 270 88.1
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 7.7e-136 488.8 562 47.0
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.9e-135 486.9 456 58.3
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.2e-122 442.2 257 80.5
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.5e-119 432.2 461 49.5
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 4.4e-107 393.3 744 35.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.5e-86 325.1 278 61.5
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.3e-71 275.4 755 29.4
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.3e-66 258.8 285 50.5
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.1e-64 251.5 186 65.6
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 6.0e-56 223.4 142 78.2
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.4e-49 200.3 149 70.5
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.7e-38 163.7 82 84.1
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.5e-30 139.0 66 87.9
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.0e-26 124.0 148 41.9
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.6e-24 117.5 142 42.3
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 3.1e-20 104.8 88 58.0
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.7e-13 82.4 66 59.1
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.4e-12 78.6 103 41.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 5.3e-12 77.4 108 43.5
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 2.2e-10 72.0 101 41.6


User provided reference genes

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