Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 5.6e-74 280.8 136 100.0
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 7.8e-60 233.8 135 87.4
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 4.6e-36 154.8 133 59.4
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 3.9e-35 151.8 136 58.8
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 6.7e-35 151.0 136 60.3
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.1e-34 150.2 137 56.9
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.5e-34 149.1 130 56.9
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 2.8e-33 145.6 129 58.1
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 1.8e-32 142.9 140 55.0
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 3.1e-32 142.1 125 55.2
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 6.9e-32 141.0 135 57.8
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 9.0e-32 140.6 141 54.6
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 1.2e-31 140.2 129 56.6
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 2.0e-31 139.4 134 52.2
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 4.5e-31 138.3 129 49.6
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 4.5e-31 138.3 141 53.9
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 1.3e-30 136.7 126 53.2
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 1.7e-30 136.3 141 54.6
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.7e-30 136.3 141 54.6
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 1.7e-30 136.3 121 61.2
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 2.2e-30 136.0 118 55.9
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 2.2e-30 136.0 140 50.7
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.9e-30 135.6 141 53.9
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.9e-30 135.6 141 53.9
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.9e-30 135.6 141 53.9
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 3.8e-30 135.2 137 53.3
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 4.9e-30 134.8 138 52.9
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 4.9e-30 134.8 118 56.8
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 4.9e-30 134.8 134 53.7
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 4.9e-30 134.8 111 61.3
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 8.4e-30 134.0 117 57.3
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 1.9e-29 132.9 137 55.5
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 3.5e-28 128.6 139 51.1
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 7.9e-28 127.5 138 45.7
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.3e-27 126.7 141 50.4
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 1.8e-27 126.3 137 48.9
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.0e-27 125.6 113 61.9
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 3.0e-27 125.6 141 50.4
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.9e-27 125.2 126 49.2
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 5.1e-27 124.8 138 52.2
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 5.1e-27 124.8 114 54.4
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 6.7e-27 124.4 138 48.6
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 1.9e-26 122.9 136 52.9
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 2.5e-26 122.5 147 46.3
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 4.3e-26 121.7 139 54.0
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 5.7e-26 121.3 137 46.7
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.3e-25 120.2 121 47.9
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.7e-25 118.6 120 52.5
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 8.2e-25 117.5 114 56.1
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.4e-24 115.9 120 51.7
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.1e-24 115.5 120 50.8
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 3.4e-23 112.1 133 48.9
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 4.5e-23 111.7 138 45.7
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 1.0e-22 110.5 88 63.6
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 1.3e-22 110.2 137 47.4
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.7e-22 109.8 108 50.9
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 2.2e-22 109.4 126 48.4
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 3.8e-22 108.6 127 52.0
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.4e-21 106.7 137 47.4
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 3.2e-21 105.5 115 50.4
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.2e-21 105.1 132 44.7
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 5.5e-21 104.8 126 47.6
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 7.2e-21 104.4 132 43.2
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 7.2e-21 104.4 107 57.9
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 9.4e-21 104.0 149 44.3
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.6e-20 103.2 132 43.2
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.6e-20 103.2 132 43.2
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.1e-20 102.8 144 47.2
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 2.7e-20 102.4 123 48.0
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 2.7e-20 102.4 124 51.6
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 2.7e-20 102.4 126 49.2
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 3.6e-20 102.1 129 50.4
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 6.1e-20 101.3 102 52.9
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 2.3e-19 99.4 128 45.3
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 3.0e-19 99.0 89 57.3
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 3.9e-19 98.6 144 45.8
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 6.7e-19 97.8 115 48.7
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 6.7e-19 97.8 101 52.5
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 6.7e-19 97.8 123 46.3
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 8.8e-19 97.4 118 44.1
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 8.8e-19 97.4 105 47.6
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.1e-18 97.1 131 43.5
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 4.3e-18 95.1 136 41.2
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 4.3e-18 95.1 130 46.2
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 7.4e-18 94.4 132 41.7
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 7.4e-18 94.4 132 42.4
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 9.7e-18 94.0 133 39.8
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 9.7e-18 94.0 115 46.1
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 1.3e-17 93.6 123 48.8
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.3e-17 93.6 92 52.2
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 2.2e-17 92.8 145 41.4
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.1e-16 90.5 85 49.4
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.4e-16 90.1 89 52.8
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.4e-16 90.1 75 65.3
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 1.4e-16 90.1 75 65.3
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.8e-16 89.7 99 48.5
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 1.8e-16 89.7 106 43.4
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.8e-16 89.7 121 47.1
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 3.1e-16 89.0 122 45.1
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 5.3e-16 88.2 125 41.6
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.5e-15 86.7 117 42.7
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 2.0e-15 86.3 115 40.0
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 2.0e-15 86.3 94 46.8
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 4.5e-15 85.1 81 51.9
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 5.9e-15 84.7 127 40.2
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 7.7e-15 84.3 70 55.7
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.0e-14 84.0 95 48.4
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 1.0e-14 84.0 117 40.2
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 1.3e-14 83.6 95 48.4
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 1.3e-14 83.6 95 48.4
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 1.3e-14 83.6 126 41.3
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 2.2e-14 82.8 91 50.5
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.2e-14 82.8 129 38.8
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 2.2e-14 82.8 117 40.2
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 2.2e-14 82.8 88 47.7
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 2.2e-14 82.8 90 46.7
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 2.9e-14 82.4 95 47.4
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 2.9e-14 82.4 91 47.3
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 5.0e-14 81.6 95 45.3
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 6.5e-14 81.3 111 45.9
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 8.5e-14 80.9 76 52.6
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 1.1e-13 80.5 91 46.2
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 1.1e-13 80.5 120 43.3
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 5.5e-13 78.2 91 46.2
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 5.5e-13 78.2 91 46.2
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 5.5e-13 78.2 91 46.2
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 1.6e-12 76.6 93 44.1
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.1e-12 76.3 75 56.0
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 6.1e-12 74.7 132 37.9
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 7.9e-12 74.3 146 38.4
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 1.8e-11 73.2 93 49.5
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 5.1e-11 71.6 71 49.3
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 3.3e-10 68.9 121 37.2
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 5.7e-10 68.2 122 36.1
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 9.7e-10 67.4 86 44.2
CSS0037124 Camellia sinensis var. sinensis HOM05D005200 ORTHO05D005760 1.8e-08 63.2 62 54.8
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 1.8e-08 63.2 106 36.8
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 5.3e-08 61.6 68 41.2
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 1.5e-07 60.1 52 55.8
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.6e-07 59.3 49 57.1
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 5.9e-07 58.2 56 51.8
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 7.7e-07 57.8 131 30.5
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 7.7e-07 57.8 88 39.8
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.0e-06 57.4 31 77.4
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 1.3e-06 57.0 33 66.7


User provided reference genes

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