Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 0.0e+00 1189.5 611 100.0
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 1.0e-255 886.7 647 73.7
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 4.4e-243 844.7 646 70.0
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 6.7e-236 820.8 643 67.7
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 4.8e-226 788.1 639 65.3
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 1.2e-219 766.9 641 64.1
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 2.4e-217 759.2 641 63.7
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 5.9e-216 754.6 641 63.5
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 2.6e-211 739.2 643 61.9
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 4.5e-208 728.4 676 59.9
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 1.9e-206 723.0 640 60.8
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 3.6e-205 718.8 632 61.7
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 2.4e-201 706.1 640 59.8
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 2.7e-200 702.6 620 59.0
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 1.0e-199 700.7 649 58.1
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 5.6e-198 694.9 656 58.8
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 2.1e-197 693.0 641 60.1
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 4.7e-197 691.8 640 58.6
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 2.3e-196 689.5 647 58.9
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 5.2e-196 688.3 643 60.7
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 6.8e-196 688.0 617 60.8
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 7.0e-193 677.9 635 60.5
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 2.1e-192 676.4 691 56.0
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 1.3e-191 673.7 640 57.8
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 5.0e-191 671.8 648 57.4
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 8.6e-191 671.0 644 59.5
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.6e-189 666.8 644 59.0
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 3.1e-188 662.5 640 57.5
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 3.1e-188 662.5 643 58.5
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 8.3e-186 654.4 640 57.2
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 4.3e-182 642.1 619 56.4
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 1.6e-181 640.2 647 54.7
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 6.8e-180 634.8 634 56.2
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 1.2e-179 634.0 619 56.1
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 5.8e-179 631.7 676 54.0
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 1.3e-178 630.6 667 54.0
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 4.2e-177 625.5 646 54.6
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 3.5e-176 622.5 635 54.2
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 5.1e-175 618.6 637 55.3
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 9.6e-174 614.4 653 53.9
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 3.6e-173 612.5 549 60.3
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 8.1e-173 611.3 630 55.2
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 2.4e-172 609.8 648 53.5
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 1.0e-167 594.3 643 52.9
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 3.0e-167 592.8 624 51.4
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 4.6e-160 568.9 589 52.6
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 3.0e-159 566.2 628 51.4
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 1.5e-158 563.9 641 49.5
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 2.5e-158 563.1 628 51.3
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 4.3e-158 562.4 712 46.6
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 3.7e-157 559.3 505 61.0
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 9.0e-156 554.7 657 48.7
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 2.2e-154 550.1 635 50.4
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 3.5e-152 542.7 642 48.8
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 7.9e-152 541.6 613 49.3
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 1.8e-151 540.4 630 50.5
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 7.6e-147 525.0 635 49.6
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 5.7e-142 508.8 636 47.2
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 3.8e-138 496.1 390 70.3
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 3.8e-138 496.1 390 70.3
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 3.8e-130 469.5 633 42.5
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 5.9e-123 445.7 517 49.5
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 5.7e-118 429.1 397 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 3.3e-97 360.1 610 37.4
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 6.1e-96 355.9 628 35.7
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 1.4e-87 328.2 662 34.9
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 3.3e-81 307.0 231 71.0
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 3.7e-69 266.9 438 39.3
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.6e-62 242.7 182 66.5
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.7e-61 241.5 321 45.8
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 1.1e-57 228.8 387 40.6
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-49 202.2 233 42.9
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 2.5e-49 201.1 147 74.1
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 6.7e-42 176.4 112 83.9
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 1.5e-33 148.7 233 39.1
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 5.8e-30 136.7 218 37.6
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 1.3e-24 119.0 112 50.0
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 1.3e-24 119.0 112 50.0
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 3.7e-24 117.5 112 49.1
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 9.0e-23 112.8 124 54.0
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 4.6e-19 100.5 271 29.5
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.8e-15 88.6 51 84.3
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 7.2e-12 76.6 148 39.9
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 6.1e-11 73.6 40 85.0
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 7.0e-07 60.1 46 60.9


User provided reference genes

Program Settings