Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20268 Davidia involucrata HOM05D002924 ORTHO05D003122 1.6e-80 302.8 156 100.0
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 5.7e-14 81.6 105 51.4
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 4.8e-13 78.6 96 51.0
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.4e-12 77.0 61 62.3
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.4e-12 77.0 64 60.9
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.8e-12 76.6 61 60.7
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 3.1e-12 75.9 115 42.6
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 2.0e-11 73.2 73 52.1
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 3.5e-11 72.4 110 45.5
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 5.9e-11 71.6 126 41.3
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.7e-10 70.1 74 55.4
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.9e-10 69.3 93 44.1
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 5.0e-10 68.6 104 45.2
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 5.0e-10 68.6 93 44.1
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 5.0e-10 68.6 95 43.2
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 6.5e-10 68.2 74 51.4
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.1e-09 67.4 61 59.0
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 1.5e-09 67.0 104 46.2
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.9e-09 66.6 93 44.1
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 4.2e-09 65.5 71 54.9
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 7.2e-09 64.7 100 42.0
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 9.4e-09 64.3 64 60.9
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.2e-08 63.9 84 46.4
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 1.2e-08 63.9 75 45.3
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.6e-08 63.5 61 55.7
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 2.1e-08 63.2 71 53.5
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 2.1e-08 63.2 94 43.6
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.1e-08 63.2 78 50.0
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.1e-08 63.2 77 53.2
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 2.7e-08 62.8 80 46.2
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 2.7e-08 62.8 63 57.1
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 2.7e-08 62.8 65 58.5
Potri.011G083900 Populus trichocarpa HOM05D002924 ORTHO05D003122 3.6e-08 62.4 63 55.6
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 4.7e-08 62.0 97 42.3
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 4.7e-08 62.0 66 53.0
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 4.7e-08 62.0 61 50.8
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 4.7e-08 62.0 85 47.1
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 4.7e-08 62.0 62 51.6
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 6.1e-08 61.6 73 47.9
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 6.1e-08 61.6 120 43.3
Cc00_g17030 Coffea canephora HOM05D002992 ORTHO05D003458 8.0e-08 61.2 36 91.7
Dinv44940 Davidia involucrata HOM05D002992 ORTHO05D003458 8.0e-08 61.2 36 91.7
HPP92_011053 Vanilla planifolia HOM05D002924 ORTHO05D003122 8.0e-08 61.2 49 63.3
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 1.0e-07 60.8 94 39.4
HPP92_011075 Vanilla planifolia HOM05D002924 ORTHO05D003122 1.0e-07 60.8 74 51.4
FvH4_2g32810 Fragaria vesca HOM05D002992 ORTHO05D003458 1.4e-07 60.5 36 88.9
FAN15G3338 Fragaria x ananassa HOM05D002992 ORTHO05D003458 1.4e-07 60.5 36 88.9
FAN20G0189 Fragaria x ananassa HOM05D002992 ORTHO05D003458 1.4e-07 60.5 36 88.9
FAN24G0727 Fragaria x ananassa HOM05D002992 ORTHO05D003458 1.4e-07 60.5 36 88.9
FAN27G1252 Fragaria x ananassa HOM05D002992 ORTHO05D003458 1.4e-07 60.5 36 88.9
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.4e-07 60.5 71 46.5
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 1.4e-07 60.5 86 40.7
RcHm_v2.0_Chr6g0309891 Rosa chinensis HOM05D002992 ORTHO05D003458 1.4e-07 60.5 36 88.9
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 1.8e-07 60.1 73 49.3
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.3e-07 59.7 71 46.5
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 3.0e-07 59.3 66 54.5
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 3.0e-07 59.3 41 68.3
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 3.0e-07 59.3 97 42.3
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 3.0e-07 59.3 71 47.9
Actinidia10215 Actinidia chinensis HOM05D002992 ORTHO05D003458 4.0e-07 58.9 36 86.1
Actinidia19300 Actinidia chinensis HOM05D002992 ORTHO05D003458 4.0e-07 58.9 36 86.1
Cfa013753 Carpinus fangiana HOM05D002992 ORTHO05D003458 4.0e-07 58.9 36 86.1
CiPaw.07G173100 Carya illinoinensis HOM05D002992 ORTHO05D003458 4.0e-07 58.9 36 86.1
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 4.0e-07 58.9 63 52.4
Haze_22412 Corylus avellana HOM05D002992 ORTHO05D003458 4.0e-07 58.9 36 86.1
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.0e-07 58.9 77 46.8
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 4.0e-07 58.9 77 46.8
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 4.0e-07 58.9 71 50.7
Prupe.1G420500 Prunus persica HOM05D002992 ORTHO05D003458 4.0e-07 58.9 36 86.1
TWI12G0960 Tripterygium wilfordii HOM05D002992 ORTHO05D003458 4.0e-07 58.9 36 86.1
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 5.2e-07 58.5 60 56.7
CSS0001554 Camellia sinensis var. sinensis HOM05D002992 ORTHO05D003458 5.2e-07 58.5 36 86.1
CSS0026691 Camellia sinensis var. sinensis HOM05D002992 ORTHO05D003458 5.2e-07 58.5 36 86.1
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 5.2e-07 58.5 65 58.5
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 5.2e-07 58.5 97 40.2
Sed0008068 Sechium edule HOM05D002992 ORTHO05D003458 5.2e-07 58.5 36 86.1
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 6.7e-07 58.2 70 51.4
Lj4P753T27 Lonicera japonica HOM05D002992 ORTHO05D003458 6.7e-07 58.2 36 86.1
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 6.7e-07 58.2 81 44.4
Cfa004149 Carpinus fangiana HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 86.1
CiPaw.07G173400 Carya illinoinensis HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 83.3
Haze_15265 Corylus avellana HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 86.1
Duzib147G0803 Durio zibethinus HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 86.1
Eucgr.I00687 Eucalyptus grandis HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 86.1
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 8.8e-07 57.8 73 47.9
MBI16_g39104_MAGBIO Magnolia biondii HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 83.3
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 8.8e-07 57.8 69 52.2
Sc02g0008060 Simmondsia chinensis HOM05D002992 ORTHO05D003458 8.8e-07 57.8 35 85.7
Solyc04g077610.4 Solanum lycopersicum HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 83.3
Sopen04g031250 Solanum pennellii HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 83.3
PGSC0003DMG400004911 Solanum tuberosum HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 83.3
TWI56G0188 Tripterygium wilfordii HOM05D002992 ORTHO05D003458 8.8e-07 57.8 36 83.3
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 1.2e-06 57.4 75 44.0
CANSAT01G3080 Cannabis sativa HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 86.1
Cpa.g.c26343.6 Carica papaya HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 86.1
Cpa.g.sc142.52 Carica papaya HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 80.6
MELO3C016831.2 Cucumis melo HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 83.3
CsaV3_4G035200 Cucumis sativus L. HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 83.3
MD15G1066700 Malus domestica HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 83.3
Manes.18G048400 Manihot esculenta HOM05D002992 ORTHO05D003458 1.2e-06 57.4 35 85.7
PSO541G1567 Papaver somniferum HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 86.1
PSO675G1318 Papaver somniferum HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 86.1
TWI12G0752 Tripterygium wilfordii HOM05D002992 ORTHO05D003458 1.2e-06 57.4 36 83.3
CSS0015041 Camellia sinensis var. sinensis HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 86.1
CSS0029930 Camellia sinensis var. sinensis HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 86.1
CiPaw.08G051300 Carya illinoinensis HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 86.1
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 1.5e-06 57.0 65 49.2
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 1.5e-06 57.0 92 44.6
Glyma.14G002600 Glycine max HOM05D011327 ORTHO05D013488 1.5e-06 57.0 97 40.2
Gohir.A12G077900 Gossypium hirsutum HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 83.3
Gohir.D12G076100 Gossypium hirsutum HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 83.3
Gorai.008G084500 Gossypium raimondii HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 83.3
Lalb_Chr09g0323681 Lupinus albus HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 86.1
Peaxi162Scf00647g00010 Petunia axillaris HOM05D002924 ORTHO05D003122 1.5e-06 57.0 108 38.9
Potri.014G014300 Populus trichocarpa HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 83.3
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 1.5e-06 57.0 66 50.0
QL12p038383 Quercus lobata HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 83.3
Sabra14G0008500 Salix brachista HOM05D002992 ORTHO05D003458 1.5e-06 57.0 36 83.3
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 2.0e-06 56.6 97 43.3
MD08G1079800 Malus domestica HOM05D002992 ORTHO05D003458 2.0e-06 56.6 36 80.6
Thecc.01G074700 Theobroma cacao HOM05D002992 ORTHO05D003458 2.0e-06 56.6 36 83.3
Atru.chr13.858 Acer truncatum HOM05D002992 ORTHO05D003458 2.6e-06 56.2 36 80.6
CAN.G1239.3 Capsicum annuum HOM05D002992 ORTHO05D003458 2.6e-06 56.2 36 80.6
CiPaw.01G002800 Carya illinoinensis HOM05D002992 ORTHO05D003458 2.6e-06 56.2 36 83.3
Glyma.01G195200 Glycine max HOM05D002992 ORTHO05D003458 2.6e-06 56.2 36 83.3
Manes.18G048300 Manihot esculenta HOM05D002992 ORTHO05D003458 2.6e-06 56.2 36 80.6
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 2.6e-06 56.2 63 50.8
Peaxi162Scf00340g00025 Petunia axillaris HOM05D002992 ORTHO05D003458 2.6e-06 56.2 36 80.6
Atru.chr3.1042 Acer truncatum HOM05D002992 ORTHO05D003458 3.3e-06 55.8 36 83.3
COL.COLO4_11601 Corchorus olitorius HOM05D002992 ORTHO05D003458 3.3e-06 55.8 36 80.6
Lalb_Chr16g0378941 Lupinus albus HOM05D002992 ORTHO05D003458 3.3e-06 55.8 36 83.3
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 3.3e-06 55.8 101 38.6
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 3.3e-06 55.8 64 50.0
TAR628G1151 Trochodendron aralioides HOM05D002992 ORTHO05D003458 3.3e-06 55.8 36 83.3
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 4.4e-06 55.5 64 57.8
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 4.4e-06 55.5 85 38.8
Hma1.2p1_1170F.1_g263380 Hydrangea macrophylla HOM05D002992 ORTHO05D003458 4.4e-06 55.5 36 83.3
Hma1.2p1_3243F.1_g334314 Hydrangea macrophylla HOM05D002992 ORTHO05D003458 4.4e-06 55.5 36 83.3
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 4.4e-06 55.5 93 40.9
PGR004G0155 Punica granatum HOM05D002992 ORTHO05D003458 4.4e-06 55.5 36 83.3
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 4.4e-06 55.5 71 45.1
Sed0007033 Sechium edule HOM05D002992 ORTHO05D003458 4.4e-06 55.5 35 82.9
Dinv26949 Davidia involucrata HOM05D002992 ORTHO05D003458 5.7e-06 55.1 36 80.6
HanXRQChr09g0254051 Helianthus annuus HOM05D002992 ORTHO05D003458 5.7e-06 55.1 36 80.6
Lalb_Chr05g0213791 Lupinus albus HOM05D002992 ORTHO05D003458 5.7e-06 55.1 34 85.3
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 5.7e-06 55.1 76 43.4
RcHm_v2.0_Chr2g0108501 Rosa chinensis HOM05D002992 ORTHO05D003458 5.7e-06 55.1 36 80.6
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 5.7e-06 55.1 94 37.2
Duzib041G0807 Durio zibethinus HOM05D002992 ORTHO05D003458 7.5e-06 54.7 36 80.6
Glyma.11G046500 Glycine max HOM05D002992 ORTHO05D003458 7.5e-06 54.7 36 83.3
Lsat_1_v5_gn_9_80920 Lactuca sativa HOM05D002992 ORTHO05D003458 7.5e-06 54.7 36 77.8
Lj2g0027311 Lotus japonicus HOM05D002992 ORTHO05D003458 7.5e-06 54.7 34 85.3
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 7.5e-06 54.7 75 46.7
Prupe.6G218400 Prunus persica HOM05D002992 ORTHO05D003458 7.5e-06 54.7 36 80.6
QL06p039096 Quercus lobata HOM05D002992 ORTHO05D003458 7.5e-06 54.7 36 80.6
Sc15g0005430 Simmondsia chinensis HOM05D002992 ORTHO05D003458 7.5e-06 54.7 36 77.8
THA.LOC104821210 Tarenaya hassleriana HOM05D002992 ORTHO05D003458 7.5e-06 54.7 36 80.6
Thecc.08G085700 Theobroma cacao HOM05D002992 ORTHO05D003458 7.5e-06 54.7 36 80.6
Aqoxy6G02536 Aquilegia oxysepala HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 80.6
Ciclev10025589m.g Citrus clementina HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 83.3
COL.COLO4_28475 Corchorus olitorius HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 80.6
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 9.7e-06 54.3 66 51.5
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 9.7e-06 54.3 89 44.9
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 9.7e-06 54.3 66 47.0
Gohir.A06G024700 Gossypium hirsutum HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 80.6
Gohir.D05G265600 Gossypium hirsutum HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 80.6
Gohir.D06G021800 Gossypium hirsutum HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 80.6
Gorai.010G026400 Gossypium raimondii HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 80.6
HanXRQChr15g0493061 Helianthus annuus HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 77.8
MBI16_g16459_MAGBIO Magnolia biondii HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 75.0
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 9.7e-06 54.3 67 47.8
Nitab4.5_0008444g0030 Nicotiana tabacum HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 77.8
Oeu000481.1 Olea europaea HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 80.6
TAR376G0146 Trochodendron aralioides HOM05D002992 ORTHO05D003458 9.7e-06 54.3 36 80.6


User provided reference genes

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