Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 3.7e-287 991.1 540 100.0
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 6.6e-191 671.4 524 75.6
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 6.1e-120 435.6 488 58.2
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.3e-117 427.9 546 54.6
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 6.3e-101 372.5 517 51.3
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 1.1e-97 361.7 565 47.3
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 9.4e-97 358.6 546 48.9
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 1.7e-93 347.8 583 45.5
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 1.1e-92 345.1 565 45.7
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 4.7e-88 329.7 560 45.5
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 3.5e-83 313.5 535 44.7
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 3.8e-82 310.1 611 42.2
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 8.0e-80 302.4 544 44.7
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 1.6e-72 278.1 516 43.0
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.6e-72 276.9 562 42.9
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 1.0e-71 275.4 538 41.4
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 2.3e-71 274.2 506 43.7
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 2.3e-71 274.2 539 43.0
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 5.2e-71 273.1 566 42.9
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 5.2e-71 273.1 555 42.2
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 3.7e-69 266.9 492 42.9
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 1.2e-67 261.9 553 40.3
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 3.5e-67 260.4 565 41.1
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 1.9e-65 254.6 583 41.2
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 3.3e-65 253.8 563 41.0
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 2.1e-64 251.1 605 38.8
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 4.7e-64 250.0 630 38.7
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 1.1e-63 248.8 600 38.2
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 2.0e-62 244.6 666 36.0
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 4.1e-60 236.9 600 37.2
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 6.6e-58 229.6 527 38.9
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 9.5e-57 225.7 499 40.5
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 1.4e-55 221.9 416 41.6
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 1.7e-53 214.9 550 39.3
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 2.9e-53 214.2 568 37.7
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 2.9e-53 214.2 587 36.6
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 1.1e-52 212.2 670 34.0
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 4.1e-52 210.3 636 34.9
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 7.1e-52 209.5 622 36.0
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 7.6e-46 189.5 527 36.6
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 1.3e-45 188.7 457 39.8
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 2.9e-45 187.6 587 34.8
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 2.4e-44 184.5 565 35.0
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 3.5e-43 180.6 628 34.2
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 3.5e-43 180.6 532 35.9
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 4.6e-43 180.3 548 35.2
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 6.0e-43 179.9 563 33.7
Atru.chr2.2419 Acer truncatum HOM05D007892 ORTHO05D009211 3.9e-42 177.2 366 40.7
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 3.1e-39 167.5 591 31.6
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 3.1e-39 167.5 540 36.1
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 9.0e-39 166.0 563 33.6
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 1.2e-38 165.6 439 36.9
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 1.2e-38 165.6 588 33.0
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 5.8e-38 163.3 531 33.5
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 1.3e-37 162.2 539 35.3
Nitab4.5_0002330g0130 Nicotiana tabacum HOM05D021138 ORTHO05D009211 3.8e-37 160.6 537 35.2
Aqoxy1G02331 Aquilegia oxysepala HOM05D007892 ORTHO05D009211 4.2e-36 157.1 654 32.4
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 4.2e-36 157.1 561 35.1
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 2.3e-34 151.4 502 33.3
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 2.3e-34 151.4 460 33.3
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 3.9e-34 150.6 540 34.4
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 4.3e-33 147.1 488 34.8
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 9.6e-33 146.0 547 33.8
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 8.1e-32 142.9 481 32.0
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 1.5e-30 138.7 542 31.9
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 3.4e-30 137.5 504 32.9
Nitab4.5_0005017g0030 Nicotiana tabacum HOM05D021138 ORTHO05D009211 2.4e-28 131.3 538 33.1
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 4.2e-28 130.6 450 32.4
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 9.3e-28 129.4 549 32.2
PSO541G2379 Papaver somniferum HOM05D056025 ORTHO05D009211 5.6e-25 120.2 568 28.9
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 8.1e-24 116.3 483 32.7
Peaxi162Scf00069g01735 Petunia axillaris HOM05D021138 ORTHO05D009211 3.8e-21 107.5 494 31.6
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 7.9e-19 99.8 544 32.2
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 3.9e-18 97.4 490 30.8
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 3.9e-18 97.4 457 28.4
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 1.5e-17 95.5 404 29.2
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 1.9e-17 95.1 276 34.8
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 8.2e-16 89.7 286 31.5
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 2.4e-15 88.2 308 31.8
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 9.0e-15 86.3 633 27.0
Oeu051084.1 Olea europaea HOM05D007892 ORTHO05D009211 2.0e-14 85.1 197 34.5
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 3.4e-14 84.3 314 30.3
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 4.5e-14 84.0 308 31.5
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 5.8e-14 83.6 144 41.7
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 2.5e-12 78.2 571 27.5
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 3.2e-12 77.8 62 67.7
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 2.1e-11 75.1 438 25.8
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 2.7e-11 74.7 138 41.3
BcaB05g22092 Brassica carinata HOM05D012500 ORTHO05D009211 4.6e-11 73.9 355 28.7
Sp6g16010 Schrenkiella parvula HOM05D012500 ORTHO05D009211 8.2e-08 63.2 488 26.0
Carub.0008s1424 Capsella rubella HOM05D012500 ORTHO05D009211 1.1e-07 62.8 465 27.5
AT5G53930 Arabidopsis thaliana HOM05D012500 ORTHO05D009211 9.0e-07 59.7 462 26.6
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 1.5e-06 58.9 545 26.8
Thhalv10013275m.g Eutrema salsugineum HOM05D012500 ORTHO05D009211 5.9e-06 57.0 481 25.6


User provided reference genes

Program Settings