Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 2.6e-59 231.9 119 100.0
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.1e-32 142.5 98 76.5
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.2e-27 126.7 94 66.0
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 1.5e-27 126.3 72 81.9
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.5e-27 126.3 81 77.8
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.6e-27 125.6 72 81.9
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 5.8e-27 124.4 68 83.8
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 2.9e-26 122.1 72 76.4
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 3.8e-26 121.7 81 69.1
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 5.0e-26 121.3 81 74.1
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 5.0e-26 121.3 79 69.6
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 6.5e-26 120.9 81 74.1
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 8.4e-26 120.6 72 75.0
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.4e-25 119.8 78 70.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 1.4e-25 119.8 80 76.2
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 2.5e-25 119.0 81 70.4
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 3.2e-25 118.6 87 67.8
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 4.2e-25 118.2 75 74.7
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 4.2e-25 118.2 72 76.4
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 5.5e-25 117.9 80 72.5
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 7.2e-25 117.5 78 70.5
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 1.2e-24 116.7 81 70.4
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 2.1e-24 115.9 78 67.9
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.1e-24 115.9 80 72.5
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.1e-24 115.9 81 69.1
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.5e-24 115.2 80 71.2
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.5e-24 115.2 80 71.2
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 3.5e-24 115.2 81 66.7
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 4.6e-24 114.8 76 71.1
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 6.1e-24 114.4 72 72.2
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 6.1e-24 114.4 81 67.9
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 7.9e-24 114.0 80 68.8
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 7.9e-24 114.0 81 67.9
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.0e-23 113.6 70 77.1
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 2.3e-23 112.5 81 66.7
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 2.3e-23 112.5 81 65.4
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 2.3e-23 112.5 82 67.1
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 2.3e-23 112.5 81 66.7
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.0e-23 112.1 78 66.7
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.0e-23 112.1 80 71.2
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 3.0e-23 112.1 80 71.2
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 3.9e-23 111.7 78 66.7
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.1e-23 111.3 81 66.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 8.7e-23 110.5 73 72.6
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 8.7e-23 110.5 69 75.4
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-22 110.2 80 68.8
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.1e-22 110.2 75 69.3
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.5e-22 109.8 80 68.8
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.5e-22 109.8 72 73.6
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.9e-22 109.4 81 65.4
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 1.9e-22 109.4 79 65.8
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.9e-22 109.4 72 72.2
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.5e-22 109.0 75 70.7
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.5e-22 109.0 75 70.7
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.5e-22 109.0 82 67.1
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 2.5e-22 109.0 81 65.4
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.5e-22 109.0 80 66.2
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 2.5e-22 109.0 79 63.3
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.3e-22 108.6 81 65.4
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 3.3e-22 108.6 80 66.2
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.3e-22 108.2 81 65.4
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 4.3e-22 108.2 79 68.4
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 4.3e-22 108.2 80 67.5
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 4.3e-22 108.2 80 65.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.7e-22 107.8 81 67.9
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 5.7e-22 107.8 81 66.7
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 7.4e-22 107.5 60 81.7
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 9.7e-22 107.1 80 65.0
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 9.7e-22 107.1 80 65.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.3e-21 106.7 64 76.6
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.3e-21 106.7 79 64.6
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.3e-21 106.7 79 67.1
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.3e-21 106.7 81 66.7
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.6e-21 106.3 67 76.1
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.6e-21 106.3 59 79.7
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 2.2e-21 105.9 108 52.8
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 2.2e-21 105.9 84 63.1
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 2.8e-21 105.5 79 65.8
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.8e-21 105.5 63 74.6
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 2.8e-21 105.5 81 66.7
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 2.8e-21 105.5 79 65.8
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 3.7e-21 105.1 71 71.8
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 4.8e-21 104.8 72 66.7
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 6.3e-21 104.4 58 81.0
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 8.2e-21 104.0 72 69.4
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 8.2e-21 104.0 79 67.1
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 8.2e-21 104.0 65 75.4
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.1e-20 103.6 77 64.9
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.1e-20 103.6 81 65.4
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.4e-20 103.2 71 67.6
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.8e-20 102.8 79 64.6
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.4e-20 102.4 71 67.6
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 4.1e-20 101.7 60 75.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 5.3e-20 101.3 54 81.5
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 5.3e-20 101.3 54 81.5
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 6.9e-20 100.9 79 62.0
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 9.0e-20 100.5 54 79.6
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 9.0e-20 100.5 79 62.0
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 9.0e-20 100.5 67 74.6
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 1.2e-19 100.1 69 63.8
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.5e-19 99.8 54 79.6
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.5e-19 99.8 81 63.0
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.5e-19 99.8 70 67.1
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.0e-19 99.4 54 77.8
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 2.0e-19 99.4 80 60.0
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.6e-19 99.0 60 71.7
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.6e-19 99.0 71 69.0
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 2.6e-19 99.0 60 71.7
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.4e-19 98.6 54 77.8
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.5e-19 98.2 81 63.0
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 4.5e-19 98.2 82 59.8
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 4.5e-19 98.2 53 79.2
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 5.9e-19 97.8 73 60.3
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 5.9e-19 97.8 58 72.4
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 5.9e-19 97.8 74 64.9
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 5.9e-19 97.8 50 82.0
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 7.7e-19 97.4 66 66.7
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.0e-18 97.1 70 65.7
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 1.3e-18 96.7 62 67.7
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.3e-18 96.7 79 59.5
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.3e-18 96.7 79 59.5
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.3e-18 96.7 74 62.2
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.7e-18 96.3 69 65.2
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 2.2e-18 95.9 74 63.5
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 2.2e-18 95.9 48 85.4
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.8e-18 95.1 79 58.2
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 3.8e-18 95.1 63 66.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 3.8e-18 95.1 63 66.7
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 3.8e-18 95.1 65 73.8
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.0e-18 94.7 77 63.6
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 6.5e-18 94.4 50 82.0
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 8.5e-18 94.0 76 61.8
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 1.4e-17 93.2 82 56.1
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 1.4e-17 93.2 79 58.2
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 1.4e-17 93.2 79 58.2
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 3.2e-17 92.0 58 70.7
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 9.4e-17 90.5 69 62.3
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 9.4e-17 90.5 71 59.2
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 9.4e-17 90.5 46 84.8
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.2e-16 90.1 47 76.6
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.2e-16 90.1 76 57.9
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.2e-16 90.1 85 56.5
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.2e-16 90.1 85 56.5
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 1.2e-16 90.1 64 68.8
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.6e-16 89.7 43 88.4
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.0e-15 87.0 46 80.4
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.0e-15 87.0 59 69.5
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.0e-15 87.0 86 53.5
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 8.8e-15 84.0 42 78.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.4e-12 75.9 43 74.4
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 5.3e-12 74.7 54 68.5
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 5.0e-10 68.2 50 66.0
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 2.1e-08 62.8 61 52.5
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 1.4e-07 60.1 58 58.6
Dinv08568 Davidia involucrata HOM05D033267 ORTHO05D184142 9.7e-06 53.9 32 84.4


User provided reference genes

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