Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 0.0e+00 1614.7 919 100.0
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.9e-303 1045.8 889 71.4
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 7.6e-292 1007.3 880 66.1
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 7.6e-284 980.7 867 65.2
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 3.8e-283 978.4 868 65.7
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 5.5e-282 974.5 896 63.8
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.7e-280 967.2 884 65.5
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 1.9e-274 949.5 907 62.6
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 2.4e-269 932.6 901 63.6
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 2.4e-269 932.6 916 61.6
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 4.5e-268 928.3 877 64.1
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 5.9e-268 927.9 915 61.2
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.4e-266 923.3 898 62.0
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.6e-265 919.8 910 62.2
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.1e-265 919.5 918 60.6
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.8e-264 916.4 798 69.2
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.8e-264 916.4 864 61.2
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 1.5e-263 913.3 872 65.7
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 1.3e-262 910.2 947 59.7
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 8.2e-262 907.5 904 64.2
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 9.1e-261 904.0 893 62.0
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 1.9e-258 896.3 901 60.3
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 4.2e-258 895.2 910 63.1
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 6.1e-257 891.3 859 61.4
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 6.1e-257 891.3 903 62.8
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 4.4e-255 885.2 895 62.5
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 7.5e-255 884.4 903 59.2
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.3e-254 883.6 898 61.4
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 6.3e-254 881.3 898 61.7
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 1.4e-253 880.2 1005 55.1
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 3.1e-253 879.0 896 59.9
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 2.0e-252 876.3 889 59.7
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.0e-252 876.3 898 60.1
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 2.7e-252 875.9 867 59.5
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 4.5e-252 875.2 897 60.1
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 3.8e-251 872.1 895 58.9
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 8.5e-251 870.9 895 58.8
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 1.5e-250 870.2 892 62.1
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 7.2e-250 867.8 904 59.6
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 4.0e-248 862.1 901 60.2
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 4.0e-248 862.1 925 57.3
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 9.1e-245 850.9 889 58.2
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 3.6e-241 839.0 908 57.5
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 8.0e-241 837.8 849 59.2
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 2.3e-240 836.3 824 60.9
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 4.0e-240 835.5 902 57.9
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.0e-239 833.2 890 56.3
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 2.0e-239 833.2 951 56.9
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 2.8e-238 829.3 916 57.1
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.2e-236 823.9 872 58.8
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 4.5e-236 822.0 882 58.2
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 5.9e-236 821.6 889 57.0
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.3e-235 820.5 865 61.5
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.7e-235 820.1 921 55.4
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 8.6e-235 817.8 903 57.7
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 7.3e-234 814.7 903 59.0
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 1.2e-233 813.9 867 57.2
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.6e-233 813.5 858 56.2
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.8e-233 812.8 876 55.0
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 3.6e-233 812.4 882 56.5
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 4.0e-232 808.9 895 59.7
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 5.2e-232 808.5 846 57.3
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 6.8e-232 808.1 869 56.3
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 8.9e-232 807.7 910 58.6
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.5e-231 807.0 902 57.2
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 2.6e-231 806.2 892 57.4
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 4.4e-231 805.4 916 56.3
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 1.3e-230 803.9 906 55.0
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.2e-230 803.1 915 55.0
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 4.9e-230 802.0 847 57.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 6.4e-230 801.6 886 58.1
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 4.1e-229 798.9 860 57.3
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 4.1e-229 798.9 899 58.1
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 5.4e-229 798.5 915 57.0
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 9.2e-229 797.7 907 55.5
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.6e-228 797.0 863 57.7
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 3.5e-228 795.8 893 56.3
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 7.8e-228 794.7 869 57.7
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 3.9e-227 792.3 855 56.5
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.9e-227 792.3 847 56.1
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 4.3e-226 788.9 886 54.6
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 7.3e-226 788.1 884 58.3
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 1.2e-225 787.3 891 52.5
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 1.2e-225 787.3 900 58.0
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 6.2e-225 785.0 879 57.0
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.4e-224 783.9 897 58.4
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 8.9e-224 781.2 904 54.8
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 9.8e-223 777.7 883 56.4
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 1.1e-213 747.7 887 53.2
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 1.9e-213 746.9 863 54.5
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 9.9e-207 724.5 817 53.7
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.9e-206 723.0 894 53.1
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 3.4e-191 672.9 792 54.4
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 8.4e-190 668.3 858 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 5.1e-179 632.5 902 48.2
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 3.8e-166 589.7 849 48.4
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 6.7e-163 578.9 886 44.6
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 1.0e-158 565.1 609 59.4
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 6.5e-150 535.8 397 66.8
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.5e-142 509.2 613 57.7
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 1.3e-137 495.0 520 61.9
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 6.3e-137 492.7 348 71.8
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 7.2e-133 479.2 589 56.4
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 5.2e-123 446.4 549 51.7
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 4.1e-112 410.2 773 41.9
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.7e-105 387.1 481 53.8
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 7.3e-93 346.3 534 45.7
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.0e-78 299.3 217 72.4
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 9.9e-74 282.7 292 63.0
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.3e-70 271.6 193 72.5
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.7e-70 269.6 323 54.8
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.0e-67 259.6 392 50.0
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 2.2e-65 255.0 320 53.8
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 4.6e-63 247.3 311 51.4
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 8.7e-62 243.0 883 29.3
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.2e-55 222.6 225 50.7
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 8.7e-54 216.5 363 44.4
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 7.4e-53 213.4 224 50.9
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 5.0e-49 200.7 1072 27.5
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 5.9e-42 177.2 204 56.4
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 4.1e-35 154.5 649 28.2
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 3.5e-34 151.4 324 42.6
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-32 146.4 83 88.0
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.5e-32 144.1 97 77.3
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.4e-32 143.3 100 75.0
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 3.6e-31 141.4 99 67.7
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.3e-30 138.7 339 40.4
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.3e-28 132.9 140 52.9
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 2.2e-28 132.1 114 59.6
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.8e-28 131.0 132 53.0
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 6.3e-28 130.6 111 61.3
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 4.1e-27 127.9 683 24.6
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 1.6e-23 115.9 223 39.5
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.0e-17 96.7 208 33.7
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-16 93.2 52 88.5
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.2e-16 90.5 52 86.5
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 4.7e-15 87.8 160 40.0
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.0e-14 86.7 92 53.3
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.8e-12 78.6 45 88.9
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-11 76.6 54 72.2
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 9.1e-11 73.6 45 84.4
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.0e-09 70.1 94 47.9
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 4.2e-08 64.7 48 68.8
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 4.7e-07 61.2 42 71.4


User provided reference genes

Program Settings