Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20140 Davidia involucrata HOM05D002442 ORTHO05D002670 7.5e-198 693.7 369 100.0
Dinv44034 Davidia involucrata HOM05D002442 ORTHO05D002670 5.9e-118 428.3 310 79.4
Dinv43594 Davidia involucrata HOM05D002442 ORTHO05D002670 3.2e-71 273.1 325 55.4
Actinidia30947 Actinidia chinensis HOM05D002442 ORTHO05D002670 9.6e-44 181.8 353 42.2
Actinidia05784 Actinidia chinensis HOM05D002442 ORTHO05D002670 9.0e-42 175.3 314 43.3
vmacro13528 Vaccinium macrocarpon HOM05D002442 ORTHO05D002670 4.2e-39 166.4 298 43.3
Rhsim07G0038600 Rhododendron simsii HOM05D002442 ORTHO05D002670 1.0e-37 161.8 304 43.1
Haze_02893 Corylus avellana HOM05D002442 ORTHO05D002670 1.5e-36 157.9 289 40.5
Thecc.01G401400 Theobroma cacao HOM05D002442 ORTHO05D002670 1.9e-36 157.5 281 42.0
QL04p026546 Quercus lobata HOM05D002442 ORTHO05D002670 7.3e-36 155.6 297 41.4
CiPaw.14G017500 Carya illinoinensis HOM05D002442 ORTHO05D002670 9.6e-36 155.2 301 39.5
QL04p026948 Quercus lobata HOM05D002442 ORTHO05D002670 1.1e-34 151.8 297 41.1
vmacro21072 Vaccinium macrocarpon HOM05D002442 ORTHO05D002670 1.1e-34 151.8 280 41.4
Lj7A551T56 Lonicera japonica HOM05D002442 ORTHO05D002670 3.1e-34 150.2 271 43.9
COL.COLO4_12362 Corchorus olitorius HOM05D002442 ORTHO05D002670 1.2e-33 148.3 270 42.2
RcHm_v2.0_Chr1g0344441 Rosa chinensis HOM05D002442 ORTHO05D002670 1.5e-33 147.9 356 37.9
Ca_07458_v3 Cicer arietinum L. HOM05D002442 ORTHO05D002670 2.0e-33 147.5 285 42.1
Ciclev10018460m.g Citrus clementina HOM05D002442 ORTHO05D002670 4.5e-33 146.4 291 41.2
Lj9C551G3 Lonicera japonica HOM05D002442 ORTHO05D002670 7.6e-33 145.6 281 40.6
Duzib268G1041 Durio zibethinus HOM05D002442 ORTHO05D002670 1.3e-32 144.8 293 39.6
Manes.01G273000 Manihot esculenta HOM05D002442 ORTHO05D002670 1.3e-32 144.8 284 40.5
CiPaw.13G022800 Carya illinoinensis HOM05D002442 ORTHO05D002670 2.2e-32 144.1 323 37.8
Nn1g00722 Nelumbo nucifera HOM05D002442 ORTHO05D002670 2.9e-32 143.7 278 40.3
Gohir.D12G101800 Gossypium hirsutum HOM05D002442 ORTHO05D002670 3.8e-32 143.3 287 38.7
Manes.05G057500 Manihot esculenta HOM05D002442 ORTHO05D002670 8.4e-32 142.1 323 36.5
Rhsim01G0142200 Rhododendron simsii HOM05D002442 ORTHO05D002670 1.1e-31 141.7 309 38.2
Rhsim07G0038700 Rhododendron simsii HOM05D001455 ORTHO05D002670 2.4e-31 140.6 200 46.5
Gorai.008G111000 Gossypium raimondii HOM05D002442 ORTHO05D002670 5.4e-31 139.4 287 38.7
TWI23G1321 Tripterygium wilfordii HOM05D002442 ORTHO05D002670 5.4e-31 139.4 319 38.6
Ca_07449_v3 Cicer arietinum L. HOM05D002442 ORTHO05D002670 7.1e-31 139.0 280 40.4
TAR629G2616 Trochodendron aralioides HOM05D002442 ORTHO05D002670 7.1e-31 139.0 301 38.9
Oeu037423.1 Olea europaea HOM05D002442 ORTHO05D002670 1.2e-30 138.3 276 40.2
Glyma.08G340500 Glycine max HOM05D002442 ORTHO05D002670 1.6e-30 137.9 264 40.9
Duzib133G0420 Durio zibethinus HOM05D002442 ORTHO05D002670 3.5e-30 136.7 286 38.8
Glyma.01G094200 Glycine max HOM05D002442 ORTHO05D002670 6.0e-30 136.0 257 40.5
FvH4_7g08960 Fragaria vesca HOM05D002442 ORTHO05D002670 7.9e-30 135.6 283 39.6
PGR042G0727 Punica granatum HOM05D002442 ORTHO05D002670 7.9e-30 135.6 322 38.5
Atru.chr5.83 Acer truncatum HOM05D002442 ORTHO05D002670 1.0e-29 135.2 273 41.4
Lj3g0023210 Lotus japonicus HOM05D002442 ORTHO05D002670 1.0e-29 135.2 197 46.2
Sopen01g035540 Solanum pennellii HOM05D002442 ORTHO05D002670 1.3e-29 134.8 262 38.2
Solyc01g088700.4 Solanum lycopersicum HOM05D002442 ORTHO05D002670 1.8e-29 134.4 262 38.2
TWI59G1236 Tripterygium wilfordii HOM05D002442 ORTHO05D002670 1.8e-29 134.4 317 36.6
MELO3C020380.2 Cucumis melo HOM05D002442 ORTHO05D002670 2.3e-29 134.0 280 41.1
Gorai.008G111200 Gossypium raimondii HOM05D002442 ORTHO05D002670 2.3e-29 134.0 274 39.4
Potri.014G052600 Populus trichocarpa HOM05D002442 ORTHO05D002670 2.3e-29 134.0 274 40.9
Cpa.g.sc52.78 Carica papaya HOM05D002442 ORTHO05D002670 3.0e-29 133.7 284 38.4
FAN10G3097 Fragaria x ananassa HOM05D002442 ORTHO05D002670 3.9e-29 133.3 283 39.2
Medtr8g008680 Medicago truncatula HOM05D002442 ORTHO05D002670 3.9e-29 133.3 241 40.7
CAN.G756.25 Capsicum annuum HOM05D002442 ORTHO05D002670 5.1e-29 132.9 260 38.1
Gohir.A12G098600 Gossypium hirsutum HOM05D002442 ORTHO05D002670 5.1e-29 132.9 285 37.9
Gohir.D12G102000 Gossypium hirsutum HOM05D002442 ORTHO05D002670 5.1e-29 132.9 274 39.1
Potri.002G140200 Populus trichocarpa HOM05D002442 ORTHO05D002670 6.7e-29 132.5 274 40.1
TAR375G0669 Trochodendron aralioides HOM05D002442 ORTHO05D002670 8.7e-29 132.1 300 37.7
FAN06G2407 Fragaria x ananassa HOM05D002442 ORTHO05D002670 1.1e-28 131.7 283 38.9
FAN01G1077 Fragaria x ananassa HOM05D002442 ORTHO05D002670 3.3e-28 130.2 280 38.9
FAN03G1881 Fragaria x ananassa HOM05D002442 ORTHO05D002670 5.6e-28 129.4 283 38.5
Sabra02G0109500 Salix brachista HOM05D002442 ORTHO05D002670 5.6e-28 129.4 292 39.0
Sabra14G0037400 Salix brachista HOM05D002442 ORTHO05D002670 5.6e-28 129.4 274 40.5
Sabra14G0039500 Salix brachista HOM05D002442 ORTHO05D002670 5.6e-28 129.4 274 40.5
TWI14G0765 Tripterygium wilfordii HOM05D002442 ORTHO05D002670 7.4e-28 129.0 315 36.2
Aqoxy3G02578 Aquilegia oxysepala HOM05D002442 ORTHO05D002670 9.6e-28 128.6 260 39.6
CsaV3_2G010940 Cucumis sativus L. HOM05D002442 ORTHO05D002670 9.6e-28 128.6 289 40.1
PGSC0003DMG400001722 Solanum tuberosum HOM05D002442 ORTHO05D002670 9.6e-28 128.6 262 36.6
Gohir.A12G099000 Gossypium hirsutum HOM05D002442 ORTHO05D002670 1.6e-27 127.9 274 38.3
TPR.G32119 Trifolium pratense HOM05D002442 ORTHO05D002670 1.6e-27 127.9 273 36.6
Ca_26653_v3 Cicer arietinum L. HOM05D002442 ORTHO05D002670 3.7e-27 126.7 198 42.4
FAN10G2462 Fragaria x ananassa HOM05D002442 ORTHO05D002670 3.7e-27 126.7 283 38.9
Psat4g222320 Pisum sativum HOM05D002442 ORTHO05D002670 3.7e-27 126.7 220 40.5
arahy.Tifrunner.gnm1.ann1.B3T47G Arachis hypogaea HOM05D002442 ORTHO05D002670 4.8e-27 126.3 278 37.4
TPR.G10182 Trifolium pratense HOM05D002442 ORTHO05D002670 4.8e-27 126.3 252 39.3
Nn6g33727 Nelumbo nucifera HOM05D002442 ORTHO05D002670 6.2e-27 125.9 261 42.9
Oeu024396.1 Olea europaea HOM05D002442 ORTHO05D002670 8.1e-27 125.6 302 36.4
TAR374G0749 Trochodendron aralioides HOM05D002442 ORTHO05D002670 1.1e-26 125.2 308 35.7
Psat3g153080 Pisum sativum HOM05D002442 ORTHO05D002670 1.4e-26 124.8 180 45.6
Gorai.004G167700 Gossypium raimondii HOM05D002442 ORTHO05D002670 1.8e-26 124.4 252 37.7
Medtr7g451340 Medicago truncatula HOM05D002442 ORTHO05D002670 1.8e-26 124.4 247 40.9
SalBow4G0492 Salvia bowleyana HOM05D002442 ORTHO05D002670 1.8e-26 124.4 258 36.4
Cfa011034 Carpinus fangiana HOM05D002442 ORTHO05D002670 2.4e-26 124.0 205 42.9
ClCG06G008200 Citrullus lanatus HOM05D002442 ORTHO05D002670 2.4e-26 124.0 283 40.3
arahy.Tifrunner.gnm1.ann1.X3YRCT Arachis hypogaea HOM05D002442 ORTHO05D002670 3.1e-26 123.6 280 36.1
Gohir.A08G140400 Gossypium hirsutum HOM05D002442 ORTHO05D002670 3.1e-26 123.6 268 36.6
Nitab4.5_0000563g0040 Nicotiana tabacum HOM05D002442 ORTHO05D002670 4.0e-26 123.2 297 34.7
Gohir.D08G161400 Gossypium hirsutum HOM05D002442 ORTHO05D002670 9.0e-26 122.1 252 38.1
VMungo1383G2527 Vigna mungo HOM05D002442 ORTHO05D002670 1.2e-25 121.7 260 38.8
MSTRG.28136 Avicennia marina HOM05D002442 ORTHO05D002670 3.4e-25 120.2 195 44.1
SalBow5G3615 Salvia bowleyana HOM05D002442 ORTHO05D002670 3.4e-25 120.2 211 40.3
DCAR_015791 Daucus carota HOM05D002442 ORTHO05D002670 5.8e-25 119.4 296 36.5
Lalb_Chr07g0195211 Lupinus albus HOM05D002442 ORTHO05D002670 5.8e-25 119.4 181 44.8
Glyma.03G106500 Glycine max HOM05D002442 ORTHO05D002670 7.6e-25 119.0 251 37.8
Nitab4.5_0007904g0020 Nicotiana tabacum HOM05D002442 ORTHO05D002670 1.3e-24 118.2 294 33.0
Prupe.2G118700 Prunus persica HOM05D002442 ORTHO05D002670 1.7e-24 117.9 159 49.1
DCAR_025037 Daucus carota HOM05D002442 ORTHO05D002670 3.8e-24 116.7 299 34.8
Sed0001487 Sechium edule HOM05D002442 ORTHO05D002670 3.8e-24 116.7 277 39.4
Lalb_Chr13g0290721 Lupinus albus HOM05D002442 ORTHO05D002670 4.9e-24 116.3 179 41.9
MSTRG.4951 Avicennia marina HOM05D002442 ORTHO05D002670 8.4e-24 115.5 300 32.7
MD07G1094400 Malus domestica HOM05D002442 ORTHO05D002670 8.4e-24 115.5 165 46.7
QL04p026533 Quercus lobata HOM05D002442 ORTHO05D002670 8.4e-24 115.5 164 45.7
ATR0665G061 Amborella trichopoda HOM05D002442 ORTHO05D002670 1.4e-23 114.8 192 40.6
Sed0019734 Sechium edule HOM05D002442 ORTHO05D002670 1.4e-23 114.8 294 38.8
Glyma.07G117800 Glycine max HOM05D002442 ORTHO05D002670 2.5e-23 114.0 268 37.3
Phvul.008G139000 Phaseolus vulgaris HOM05D002442 ORTHO05D002670 2.5e-23 114.0 222 38.7
Peaxi162Scf00793g00038 Petunia axillaris HOM05D002442 ORTHO05D002670 3.2e-23 113.6 252 36.1
arahy.Tifrunner.gnm1.ann1.K0SAPT Arachis hypogaea HOM05D002442 ORTHO05D002670 4.2e-23 113.2 174 46.6
MD02G1222000 Malus domestica HOM05D002442 ORTHO05D002670 4.2e-23 113.2 224 38.4
arahy.Tifrunner.gnm1.ann1.7WKR24 Arachis hypogaea HOM05D002442 ORTHO05D002670 5.5e-23 112.8 281 35.2
arahy.Tifrunner.gnm1.ann1.E50ITV Arachis hypogaea HOM05D002442 ORTHO05D002670 5.5e-23 112.8 174 46.0
Migut.B01498 Erythranthe guttata HOM05D002442 ORTHO05D002670 5.5e-23 112.8 171 43.3
Gohir.A08G028700 Gossypium hirsutum HOM05D002442 ORTHO05D002670 5.5e-23 112.8 294 35.0
Gorai.004G038200 Gossypium raimondii HOM05D002442 ORTHO05D002670 7.1e-23 112.5 284 33.1
Ah.09g234080 Amaranthus hybridus HOM05D002442 ORTHO05D002670 2.1e-22 110.9 224 37.5
Phvul.010G043700 Phaseolus vulgaris HOM05D002442 ORTHO05D002670 2.1e-22 110.9 211 39.8
Gohir.D08G039432 Gossypium hirsutum HOM05D002442 ORTHO05D002670 2.7e-22 110.5 284 32.7
PGR042G2236 Punica granatum HOM05D002442 ORTHO05D002670 2.7e-22 110.5 164 44.5
Lsat_1_v5_gn_4_38241 Lactuca sativa HOM05D002442 ORTHO05D002670 3.5e-22 110.2 343 32.7
Lalb_Chr13g0290711 Lupinus albus HOM05D002442 ORTHO05D002670 3.5e-22 110.2 254 35.8
Hund21144 Selenicereus undatus HOM05D002442 ORTHO05D002670 4.6e-22 109.8 258 36.0
Dinv25157 Davidia involucrata HOM05D002442 ORTHO05D002670 7.9e-22 109.0 215 38.6
EL10Ac8g20227 Beta vulgaris HOM05D002442 ORTHO05D002670 1.3e-21 108.2 342 29.5
TWI23G0314 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 1.3e-21 108.2 130 48.5
Oeu034852.1 Olea europaea HOM05D002442 ORTHO05D002670 1.8e-21 107.8 256 36.3
Lalb_Chr12g0210391 Lupinus albus HOM05D002442 ORTHO05D002670 3.9e-21 106.7 126 50.8
AL5G42450 Arabidopsis lyrata HOM05D002442 ORTHO05D002670 5.1e-21 106.3 204 38.7
Migut.B01497 Erythranthe guttata HOM05D002442 ORTHO05D002670 5.1e-21 106.3 270 34.4
Sc26g0001740 Simmondsia chinensis HOM05D002442 ORTHO05D002670 6.7e-21 105.9 165 42.4
Ah.14g087520 Amaranthus hybridus HOM05D002442 ORTHO05D002670 8.7e-21 105.5 344 30.2
Psat3g156920 Pisum sativum HOM05D002442 ORTHO05D002670 8.7e-21 105.5 287 35.5
Sp5g02980 Schrenkiella parvula HOM05D002442 ORTHO05D002670 1.1e-20 105.1 226 37.6
A04p01770 Brassica napus HOM05D002442 ORTHO05D002670 1.9e-20 104.4 248 33.5
BraA04t15901Z Brassica rapa HOM05D002442 ORTHO05D002670 1.9e-20 104.4 248 33.5
CANSAT25G3091 Cannabis sativa HOM05D002442 ORTHO05D002670 2.5e-20 104.0 226 35.8
Hma1.2p1_1672F.1_g296850 Hydrangea macrophylla HOM05D002442 ORTHO05D002670 2.5e-20 104.0 195 37.9
BcaB02g08185 Brassica carinata HOM05D002442 ORTHO05D002670 4.3e-20 103.2 244 34.4
VMungo0331G1943 Vigna mungo HOM05D002442 ORTHO05D002670 4.3e-20 103.2 208 37.5
Lsat_1_v5_gn_1_83640 Lactuca sativa HOM05D002442 ORTHO05D002670 5.7e-20 102.8 122 54.1
BcaC02g10120 Brassica carinata HOM05D002442 ORTHO05D002670 9.6e-20 102.1 246 33.3
BolC4t24814H Brassica oleracea HOM05D002442 ORTHO05D002670 9.6e-20 102.1 246 33.3
HanXRQChr14g0457481 Helianthus annuus HOM05D002442 ORTHO05D002670 9.6e-20 102.1 124 48.4
ECA234G4043 Erigeron canadensis HOM05D002442 ORTHO05D002670 2.8e-19 100.5 121 49.6
C04p32490 Brassica napus HOM05D002442 ORTHO05D002670 4.8e-19 99.8 247 33.2
Aa31LG1G26220 Aethionema arabicum HOM05D002442 ORTHO05D002670 8.2e-19 99.0 257 35.8
AT3G60240 Arabidopsis thaliana HOM05D002442 ORTHO05D002670 1.1e-18 98.6 156 40.4
MELO3C006274.2 Cucumis melo HOM05D002442 ORTHO05D002670 1.1e-18 98.6 243 33.3
Sc02g0003230 Simmondsia chinensis HOM05D002442 ORTHO05D002670 1.8e-18 97.8 258 33.3
CARHR170550 Cardamine hirsuta HOM05D002442 ORTHO05D002670 2.4e-18 97.4 207 38.2
THA.LOC104802505 Tarenaya hassleriana HOM05D002442 ORTHO05D002670 2.4e-18 97.4 248 35.9
TAR375G0492 Trochodendron aralioides HOM05D002442 ORTHO05D002670 2.4e-18 97.4 212 38.7
AUR62012822 Chenopodium quinoa HOM05D002442 ORTHO05D002670 5.3e-18 96.3 125 48.8
Hund17120 Selenicereus undatus HOM05D002442 ORTHO05D002670 5.3e-18 96.3 203 33.0
HanXRQChr17g0562571 Helianthus annuus HOM05D002442 ORTHO05D002670 6.9e-18 95.9 261 33.0
Carub.0005s2698 Capsella rubella HOM05D002442 ORTHO05D002670 9.0e-18 95.5 266 37.6
AUR62021834 Chenopodium quinoa HOM05D002442 ORTHO05D002670 9.0e-18 95.5 117 49.6
GSVIVG01018331001 Vitis vinifera HOM05D002442 ORTHO05D002670 1.2e-17 95.1 189 41.3
THA.LOC104817181 Tarenaya hassleriana HOM05D002442 ORTHO05D002670 1.5e-17 94.7 173 39.3
Thhalv10005736m.g Eutrema salsugineum HOM05D002442 ORTHO05D002670 2.0e-17 94.4 287 32.1
Gohir.D08G039366 Gossypium hirsutum HOM05D002442 ORTHO05D002670 2.6e-17 94.0 270 31.5
HanXRQChr12g0383221 Helianthus annuus HOM05D002442 ORTHO05D002670 3.4e-17 93.6 268 32.8
Os07g0555200 Oryza sativa ssp. japonica HOM05D002442 ORTHO05D002670 3.4e-17 93.6 226 37.2
ClCG05G002950 Citrullus lanatus HOM05D002442 ORTHO05D002670 4.5e-17 93.2 228 35.5
Eucgr.E01663 Eucalyptus grandis HOM05D002442 ORTHO05D002670 4.5e-17 93.2 301 31.2
SGA_v2.0_scaffold95G28730 Striga asiatica HOM05D002442 ORTHO05D002670 4.5e-17 93.2 198 38.4
CsaV3_3G010520 Cucumis sativus L. HOM05D002442 ORTHO05D002670 7.6e-17 92.4 155 38.7
CDE12G0937 Ceratophyllum demersum HOM05D002442 ORTHO05D002670 2.9e-16 90.5 128 42.2
AUR62013779 Chenopodium quinoa HOM05D002442 ORTHO05D002670 2.9e-16 90.5 203 36.0
unitig_22.g6701 Utricularia gibba HOM05D002442 ORTHO05D002670 2.9e-16 90.5 180 40.6
CDE04G0084 Ceratophyllum demersum HOM05D002442 ORTHO05D002670 3.8e-16 90.1 186 36.6
Aa31LG1G26230 Aethionema arabicum HOM05D002442 ORTHO05D002670 4.2e-15 86.7 275 32.4
Sed0024848 Sechium edule HOM05D002442 ORTHO05D002670 7.1e-15 85.9 203 35.0
EL10Ac1g00728 Beta vulgaris HOM05D002442 ORTHO05D002670 2.7e-14 84.0 188 35.1
Actinidia21621 Actinidia chinensis HOM05D002442 ORTHO05D002670 7.9e-14 82.4 156 39.1
Nitab4.5_0001981g0030 Nicotiana tabacum HOM05D002442 ORTHO05D002670 1.8e-13 81.3 200 33.5
Zm00001eb106680 Zea mays HOM05D002442 ORTHO05D002670 1.9e-12 77.8 261 30.3
Ah.05g177720 Amaranthus hybridus HOM05D002442 ORTHO05D002670 2.5e-12 77.4 224 33.0
CAN.G572.30 Capsicum annuum HOM05D002442 ORTHO05D002670 4.3e-12 76.6 247 32.4
ECA248G0883 Erigeron canadensis HOM05D002442 ORTHO05D002670 5.7e-12 76.3 171 36.8
HPP92_020916 Vanilla planifolia HOM05D002442 ORTHO05D002670 7.4e-12 75.9 230 31.3
Nitab4.5_0002559g0020 Nicotiana tabacum HOM05D002442 ORTHO05D002670 9.7e-12 75.5 369 26.8
MD07G1094100 Malus domestica HOM05D002442 ORTHO05D002670 1.6e-11 74.7 92 50.0
Peaxi162Scf00715g00012 Petunia axillaris HOM05D002442 ORTHO05D002670 4.8e-11 73.2 323 27.6
AUR62023377 Chenopodium quinoa HOM05D002442 ORTHO05D002670 6.9e-10 69.3 103 40.8
Solyc08g077700.3 Solanum lycopersicum HOM05D002442 ORTHO05D002670 6.9e-10 69.3 219 29.7
Sopen08g026210 Solanum pennellii HOM05D002442 ORTHO05D002670 6.9e-10 69.3 218 29.4
Zm00001eb323810 Zea mays HOM05D002442 ORTHO05D002670 2.9e-08 63.9 321 25.2
unitig_578.g16708 Utricularia gibba HOM05D002442 ORTHO05D002670 1.1e-07 62.0 94 37.2
Hma1.2p1_2750F.1_g327830 Hydrangea macrophylla HOM05D002442 ORTHO05D002670 4.2e-07 60.1 202 34.7
Hma1.2p1_1397F.1_g280700 Hydrangea macrophylla HOM05D002442 ORTHO05D002670 2.1e-06 57.8 202 32.7
Pp3c3_37250 Physcomitrium patens HOM05D002442 ORTHO05D002670 6.1e-06 56.2 116 32.8


User provided reference genes

Program Settings