Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 3.1e-66 255.0 128 100.0
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.1e-28 130.2 106 68.9
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.0e-28 129.4 106 66.0
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 7.4e-28 127.5 104 70.2
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.8e-26 122.9 106 64.2
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.1e-26 122.1 109 64.2
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 9.1e-26 120.6 97 68.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 4.5e-25 118.2 105 62.9
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 5.9e-25 117.9 93 67.7
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 5.9e-25 117.9 93 63.4
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.7e-24 116.3 105 61.0
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 2.2e-24 115.9 105 60.0
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 2.9e-24 115.5 93 61.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 5.0e-24 114.8 93 64.5
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 8.5e-24 114.0 93 63.4
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.1e-23 113.6 105 59.0
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.5e-23 113.2 97 63.9
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.9e-23 112.8 96 65.6
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.5e-23 112.5 93 61.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.2e-23 112.1 93 61.3
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 4.2e-23 111.7 94 63.8
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.2e-23 111.7 97 61.9
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.5e-23 111.3 106 59.4
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 5.5e-23 111.3 106 58.5
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 5.5e-23 111.3 106 58.5
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.2e-23 110.9 93 62.4
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-22 110.2 108 55.6
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.6e-22 109.8 93 61.3
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.7e-22 109.0 93 61.3
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 3.6e-22 108.6 101 58.4
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.6e-22 108.6 104 58.7
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 3.6e-22 108.6 96 59.4
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 3.6e-22 108.6 96 59.4
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 6.1e-22 107.8 97 61.9
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 6.1e-22 107.8 84 64.3
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 6.1e-22 107.8 90 66.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.0e-21 107.1 93 62.4
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.4e-21 106.7 93 60.2
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.4e-21 106.7 87 66.7
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.3e-21 105.9 108 55.6
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 4.0e-21 105.1 107 55.1
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 4.0e-21 105.1 93 61.3
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.7e-21 104.4 102 59.8
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 8.8e-21 104.0 93 60.2
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.0e-20 102.8 90 58.9
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.0e-20 102.8 93 55.9
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.0e-20 102.8 96 60.4
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 2.6e-20 102.4 104 57.7
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.6e-20 102.4 93 54.8
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 2.6e-20 102.4 93 54.8
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.3e-20 102.1 90 58.9
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 3.3e-20 102.1 93 59.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 5.7e-20 101.3 91 59.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 7.4e-20 100.9 97 60.8
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 2.2e-19 99.4 97 59.8
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 2.8e-19 99.0 92 56.5
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 4.8e-19 98.2 92 60.9
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 4.8e-19 98.2 94 56.4
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.8e-19 98.2 109 55.0
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 4.8e-19 98.2 84 61.9
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 8.2e-19 97.4 105 56.2
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-18 96.7 90 56.7
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 1.4e-18 96.7 92 58.7
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.4e-18 96.7 97 59.8
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.3e-18 94.7 93 54.8
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.0e-17 92.8 111 51.4
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.0e-17 92.8 93 54.8
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 2.0e-17 92.8 94 56.4
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 2.6e-17 92.4 107 54.2
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.5e-17 92.0 83 62.7
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 5.9e-17 91.3 111 51.4
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.7e-17 90.9 93 52.7
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 7.7e-17 90.9 81 63.0
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 7.7e-17 90.9 81 63.0
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.3e-16 90.1 113 46.9
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-16 90.1 87 57.5
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.3e-16 90.1 83 61.4
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.7e-16 89.7 80 63.8
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.2e-16 89.4 78 62.8
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 2.2e-16 89.4 83 61.4
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.8e-16 88.6 111 49.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 5.0e-16 88.2 107 44.9
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 6.5e-16 87.8 107 46.7
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 8.5e-16 87.4 90 54.4
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.5e-15 86.7 91 50.5
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.2e-15 85.5 115 45.2
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 3.2e-15 85.5 95 53.7
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 4.2e-15 85.1 86 54.7
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 5.5e-15 84.7 92 50.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 7.2e-15 84.3 99 53.5
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 3.6e-14 82.0 85 58.8
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 6.1e-14 81.3 77 58.4
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 8.0e-14 80.9 93 48.4
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.0e-13 80.5 82 58.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.4e-13 80.1 94 52.1
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.8e-13 79.7 85 57.6
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 2.3e-13 79.3 85 55.3
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.0e-13 78.6 76 57.9
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 4.0e-13 78.6 95 49.5
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 6.8e-13 77.8 88 48.9
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 8.8e-13 77.4 66 62.1
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.2e-12 77.0 63 66.7
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 1.2e-12 77.0 63 66.7
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.5e-12 76.6 82 54.9
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.0e-12 76.3 84 53.6
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 3.4e-12 75.5 94 47.9
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 7.5e-12 74.3 110 47.3
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 7.5e-12 74.3 67 56.7
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.3e-11 73.6 68 57.4
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.7e-11 73.2 98 48.0
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 1.7e-11 73.2 98 48.0
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.7e-11 73.2 98 48.0
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.8e-11 72.4 99 46.5
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 4.8e-11 71.6 103 46.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 4.8e-11 71.6 98 49.0
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 6.3e-11 71.2 98 48.0
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 6.3e-11 71.2 110 46.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 6.3e-11 71.2 80 53.8
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 8.3e-11 70.9 96 50.0
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.1e-10 70.5 123 39.8
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 3.1e-10 68.9 98 49.0
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 3.1e-10 68.9 99 48.5
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 4.1e-10 68.6 98 46.9
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.1e-10 68.6 100 48.0
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.1e-10 68.6 100 48.0
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 7.0e-10 67.8 98 44.9
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 7.0e-10 67.8 98 46.9
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 7.0e-10 67.8 98 44.9
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 7.0e-10 67.8 98 46.9
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.2e-09 67.0 73 49.3
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.2e-09 67.0 109 46.8
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 1.6e-09 66.6 98 44.9
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.5e-09 65.5 69 52.2
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 3.5e-09 65.5 110 45.5
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 5.9e-09 64.7 69 52.2
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 5.9e-09 64.7 69 52.2
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 7.7e-09 64.3 69 50.7
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 7.7e-09 64.3 69 50.7
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 7.7e-09 64.3 69 50.7
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.3e-08 63.5 97 44.3
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 1.7e-08 63.2 91 41.8
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.2e-08 62.8 63 54.0
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 5.0e-08 61.6 89 46.1
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 5.0e-08 61.6 74 45.9
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 5.0e-08 61.6 102 37.3
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 8.5e-08 60.8 69 47.8
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 8.5e-08 60.8 80 47.5
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 1.1e-07 60.5 70 45.7
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 1.1e-07 60.5 70 45.7
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.5e-07 60.1 75 46.7
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 1.5e-07 60.1 72 47.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.9e-07 59.7 73 50.7
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 1.9e-07 59.7 75 45.3
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 1.9e-07 59.7 75 45.3
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 1.9e-07 59.7 75 45.3
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 4.2e-07 58.5 75 45.3
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 5.5e-07 58.2 69 44.9
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 5.5e-07 58.2 69 44.9
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 5.5e-07 58.2 69 44.9
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 5.5e-07 58.2 75 44.0
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 7.2e-07 57.8 69 44.9
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.2e-06 57.0 68 45.6
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 1.6e-06 56.6 75 44.0
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.1e-06 56.2 68 45.6


User provided reference genes

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