Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 9.6e-107 390.2 200 100.0
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 7.5e-59 231.1 162 78.4
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.1e-49 200.7 172 65.7
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 8.3e-42 174.5 174 59.2
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 8.3e-42 174.5 201 56.7
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.7e-37 158.7 167 55.7
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.4e-35 152.5 174 57.5
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.4e-35 152.5 202 53.5
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 4.4e-35 152.1 202 53.5
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 5.8e-35 151.8 200 51.0
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 2.2e-34 149.8 171 56.7
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.8e-33 146.7 175 53.1
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.2e-32 144.1 186 53.8
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.6e-32 143.7 177 54.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 2.0e-32 143.3 212 49.5
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 3.5e-32 142.5 131 65.6
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.7e-31 140.2 178 53.9
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.9e-31 139.0 148 57.4
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 3.9e-31 139.0 190 51.6
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.5e-30 137.1 165 53.9
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 1.6e-29 133.7 172 50.0
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.1e-29 133.3 177 50.8
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.8e-29 132.9 147 53.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 3.6e-29 132.5 173 53.8
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 3.6e-29 132.5 195 47.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 8.0e-29 131.3 182 48.9
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.1e-28 131.0 172 52.9
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.4e-28 130.6 170 54.7
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.4e-28 130.6 172 51.2
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.3e-28 129.8 155 53.5
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 3.1e-28 129.4 172 51.7
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.1e-28 129.4 172 50.6
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 5.2e-28 128.6 160 52.5
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 5.2e-28 128.6 150 53.3
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 8.9e-28 127.9 180 49.4
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 8.9e-28 127.9 178 50.0
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.2e-27 127.5 150 52.7
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.2e-27 127.5 157 51.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 7.5e-27 124.8 206 44.7
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 9.8e-27 124.4 178 51.1
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 9.8e-27 124.4 157 51.6
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.7e-26 123.6 201 45.3
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.9e-26 122.9 153 49.0
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 4.9e-26 122.1 161 49.1
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 4.9e-26 122.1 172 52.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.4e-26 121.7 180 47.2
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 8.3e-26 121.3 171 47.4
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.4e-25 119.8 205 46.8
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 2.4e-25 119.8 151 51.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 5.4e-25 118.6 202 44.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.0e-25 118.2 176 47.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.2e-25 117.9 176 47.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.2e-25 117.9 176 47.2
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-24 117.5 149 51.7
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 4.6e-24 115.5 165 49.7
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.0e-23 114.4 161 49.1
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 1.0e-23 114.4 156 50.0
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.3e-23 114.0 159 48.4
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 3.9e-23 112.5 162 50.6
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 6.6e-23 111.7 175 46.3
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.1e-22 110.9 159 52.2
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.9e-22 110.2 153 48.4
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 9.5e-22 107.8 183 45.4
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 2.8e-21 106.3 205 40.0
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 4.7e-21 105.5 169 46.7
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.4e-20 104.0 200 39.5
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.3e-20 103.2 145 47.6
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 3.1e-20 102.8 162 45.7
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 4.0e-20 102.4 207 42.0
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 5.2e-20 102.1 185 42.7
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.5e-19 100.5 155 44.5
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 2.0e-19 100.1 175 46.3
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 5.8e-19 98.6 173 44.5
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.9e-19 97.8 173 39.9
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 1.3e-18 97.4 128 52.3
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.7e-18 97.1 176 44.9
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.2e-18 96.7 180 42.2
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.9e-18 96.3 209 37.3
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.3e-18 94.7 169 40.2
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 8.3e-18 94.7 169 40.2
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-17 94.0 173 38.7
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.9e-17 93.6 181 43.1
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 3.2e-17 92.8 152 44.7
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.1e-17 92.4 172 43.6
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 9.2e-17 91.3 172 41.9
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.1e-16 90.1 170 39.4
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 2.7e-16 89.7 99 55.6
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.7e-16 89.7 145 46.2
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 1.0e-15 87.8 173 41.0
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.7e-15 87.0 170 39.4
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.3e-15 86.7 176 44.3
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 6.6e-15 85.1 151 43.7
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 6.6e-15 85.1 202 37.1
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.9e-14 83.6 171 39.8
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.9e-14 83.6 159 42.8
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 3.3e-14 82.8 106 52.8
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 4.3e-14 82.4 169 41.4
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 5.6e-14 82.0 130 49.2
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 5.6e-14 82.0 141 43.3
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 9.5e-14 81.3 149 43.0
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.2e-13 80.9 124 47.6
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.2e-13 80.9 197 36.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.1e-12 77.8 111 46.8
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 3.1e-12 76.3 187 39.6
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 4.0e-12 75.9 170 36.5
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 5.2e-12 75.5 163 41.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 8.9e-12 74.7 193 37.8
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.5e-11 73.9 98 46.9
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.5e-11 73.9 113 45.1
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 2.0e-11 73.6 98 45.9
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.6e-11 73.2 177 37.9
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.7e-10 70.5 180 36.1
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.4e-09 67.4 174 37.9
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.4e-09 67.4 180 35.0
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 5.4e-09 65.5 176 35.2
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.2e-08 64.3 141 40.4
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 6.0e-08 62.0 137 37.2
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.0e-07 61.2 173 32.4


User provided reference genes

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