Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19952 Davidia involucrata HOM05D007213 ORTHO05D009165 2.9e-69 265.4 160 100.0
Dinv35497 Davidia involucrata HOM05D007213 ORTHO05D009165 2.8e-24 115.9 70 90.0
Dinv05524 Davidia involucrata HOM05D007213 ORTHO05D009165 3.4e-22 109.0 70 82.9
DCAR_013347 Daucus carota HOM05D007213 ORTHO05D009165 7.9e-19 97.8 70 72.9
CSS0032989 Camellia sinensis var. sinensis HOM05D007213 ORTHO05D009165 6.7e-18 94.7 70 75.7
Rhsim06G0000200 Rhododendron simsii HOM05D007213 ORTHO05D009165 4.3e-17 92.0 72 69.4
GSVIVG01013472001 Vitis vinifera HOM05D007213 ORTHO05D009165 4.3e-17 92.0 70 70.0
Actinidia08359 Actinidia chinensis HOM05D007213 ORTHO05D009165 5.6e-17 91.7 70 70.0
Actinidia17102 Actinidia chinensis HOM05D007213 ORTHO05D009165 5.6e-17 91.7 70 70.0
CiPaw.07G129300 Carya illinoinensis HOM05D007213 ORTHO05D009165 7.4e-17 91.3 70 67.1
Actinidia15534 Actinidia chinensis HOM05D007213 ORTHO05D009165 3.7e-16 89.0 70 68.6
Lsat_1_v5_gn_8_25680 Lactuca sativa HOM05D007213 ORTHO05D009165 3.7e-16 89.0 70 64.3
AUR62042263 Chenopodium quinoa HOM05D007213 ORTHO05D009165 4.8e-16 88.6 85 55.3
MBI01_g32846_MAGBIO Magnolia biondii HOM05D007213 ORTHO05D009165 4.8e-16 88.6 70 65.7
Haze_22902 Corylus avellana HOM05D007213 ORTHO05D009165 1.4e-15 87.0 70 64.3
Cfa014177 Carpinus fangiana HOM05D007213 ORTHO05D009165 1.8e-15 86.7 70 64.3
CDE06G2408 Ceratophyllum demersum HOM05D007213 ORTHO05D009165 1.8e-15 86.7 70 62.9
ECA233G0001 Erigeron canadensis HOM05D007213 ORTHO05D009165 3.1e-15 85.9 70 65.7
FvH4_5g26850 Fragaria vesca HOM05D007213 ORTHO05D009165 3.1e-15 85.9 70 64.3
FAN13G0578 Fragaria x ananassa HOM05D007213 ORTHO05D009165 3.1e-15 85.9 70 64.3
FAN18G3120 Fragaria x ananassa HOM05D007213 ORTHO05D009165 3.1e-15 85.9 70 64.3
FAN04G0748 Fragaria x ananassa HOM05D007213 ORTHO05D009165 4.0e-15 85.5 70 64.3
FAN08G1354 Fragaria x ananassa HOM05D007213 ORTHO05D009165 4.0e-15 85.5 70 64.3
Potri.002G000800 Populus trichocarpa HOM05D007213 ORTHO05D009165 5.3e-15 85.1 70 62.9
PGSC0003DMG400025663 Solanum tuberosum HOM05D007213 ORTHO05D009165 1.2e-14 84.0 70 62.9
TAR381G0309 Trochodendron aralioides HOM05D007213 ORTHO05D009165 1.2e-14 84.0 70 64.3
vmacro21731 Vaccinium macrocarpon HOM05D007213 ORTHO05D009165 1.2e-14 84.0 64 70.3
Cc10_g00050 Coffea canephora HOM05D007213 ORTHO05D009165 1.5e-14 83.6 70 62.9
Manes.05G113600 Manihot esculenta HOM05D007213 ORTHO05D009165 1.5e-14 83.6 70 61.4
Nn5g31088 Nelumbo nucifera HOM05D007213 ORTHO05D009165 1.5e-14 83.6 70 58.6
HanXRQChr07g0204351 Helianthus annuus HOM05D007213 ORTHO05D009165 3.4e-14 82.4 70 58.6
Prupe.1G004400 Prunus persica HOM05D007213 ORTHO05D009165 4.5e-14 82.0 70 61.4
TWI12G1047 Tripterygium wilfordii HOM05D007213 ORTHO05D009165 4.5e-14 82.0 70 58.6
Sabra02G0000800 Salix brachista HOM05D007213 ORTHO05D009165 7.6e-14 81.3 70 60.0
Sc07g0007610 Simmondsia chinensis HOM05D007213 ORTHO05D009165 7.6e-14 81.3 72 61.1
Nitab4.5_0003364g0010 Nicotiana tabacum HOM05D007213 ORTHO05D009165 1.3e-13 80.5 70 58.6
Aqoxy5G00918 Aquilegia oxysepala HOM05D007213 ORTHO05D009165 4.9e-13 78.6 89 52.8
Ciclev10000432m.g Citrus clementina HOM05D007213 ORTHO05D009165 6.5e-13 78.2 70 58.6
MD04G1004600 Malus domestica HOM05D007213 ORTHO05D009165 6.5e-13 78.2 70 58.6
QL02p016552 Quercus lobata HOM05D007213 ORTHO05D009165 6.5e-13 78.2 70 61.4
COL.COLO4_36704 Corchorus olitorius HOM05D007213 ORTHO05D009165 1.4e-12 77.0 70 54.3
THA.LOC104801651 Tarenaya hassleriana HOM05D007213 ORTHO05D009165 1.4e-12 77.0 70 57.1
Carub.0006s2290 Capsella rubella HOM05D007213 ORTHO05D009165 1.9e-12 76.6 70 55.7
Aa31LG9G12510 Aethionema arabicum HOM05D007213 ORTHO05D009165 7.1e-12 74.7 70 54.3
AUR62036517 Chenopodium quinoa HOM05D007213 ORTHO05D009165 9.3e-12 74.3 77 54.5
Peaxi162Scf00385g01231 Petunia axillaris HOM05D007213 ORTHO05D009165 1.2e-11 73.9 70 55.7
AL6G36700 Arabidopsis lyrata HOM05D007213 ORTHO05D009165 1.6e-11 73.6 70 52.9
PSO170G0484 Papaver somniferum HOM05D007213 ORTHO05D009165 1.6e-11 73.6 66 62.1
Cpa.g.sc36.83 Carica papaya HOM05D007213 ORTHO05D009165 2.1e-11 73.2 70 52.9
Ca_24332_v3 Cicer arietinum L. HOM05D007213 ORTHO05D009165 2.1e-11 73.2 70 54.3
Eucgr.F03636 Eucalyptus grandis HOM05D007213 ORTHO05D009165 2.1e-11 73.2 70 54.3
Psat4g219720 Pisum sativum HOM05D007213 ORTHO05D009165 2.1e-11 73.2 69 55.1
RcHm_v2.0_Chr7g0217751 Rosa chinensis HOM05D007213 ORTHO05D009165 2.1e-11 73.2 62 64.5
HPP92_026843 Vanilla planifolia HOM05D007213 ORTHO05D009165 2.7e-11 72.8 70 54.3
Medtr5g004630 Medicago truncatula HOM05D007213 ORTHO05D009165 4.6e-11 72.0 69 55.1
Thhalv10016307m.g Eutrema salsugineum HOM05D007213 ORTHO05D009165 6.1e-11 71.6 70 52.9
AT5G25070 Arabidopsis thaliana HOM05D007213 ORTHO05D009165 1.0e-10 70.9 70 50.0
C04p08490 Brassica napus HOM05D007213 ORTHO05D009165 1.0e-10 70.9 70 52.9
BolC4t22448H Brassica oleracea HOM05D007213 ORTHO05D009165 1.0e-10 70.9 70 52.9
CARHR285120 Cardamine hirsuta HOM05D007213 ORTHO05D009165 1.3e-10 70.5 70 51.4
Lsat_1_v5_gn_4_123560 Lactuca sativa HOM05D007213 ORTHO05D009165 1.3e-10 70.5 67 55.2
PSO017G1686 Papaver somniferum HOM05D007213 ORTHO05D009165 1.3e-10 70.5 65 60.0
Sp4g21590 Schrenkiella parvula HOM05D007213 ORTHO05D009165 1.3e-10 70.5 70 52.9
SpUn0018_0080 Schrenkiella parvula HOM05D007213 ORTHO05D009165 1.3e-10 70.5 70 52.9
Zm00001eb035390 Zea mays HOM05D007213 ORTHO05D009165 1.3e-10 70.5 68 55.9
EL10Ac5g11683 Beta vulgaris HOM05D007213 ORTHO05D009165 1.8e-10 70.1 60 60.0
CAN.G1330.34 Capsicum annuum HOM05D007213 ORTHO05D009165 1.8e-10 70.1 69 58.0
Glyma.01G245400 Glycine max HOM05D007213 ORTHO05D009165 1.8e-10 70.1 69 52.2
Lsat_1_v5_gn_4_171321 Lactuca sativa HOM05D007213 ORTHO05D009165 1.8e-10 70.1 67 55.2
Phvul.002G054800 Phaseolus vulgaris HOM05D007213 ORTHO05D009165 2.3e-10 69.7 69 52.2
A05p07120 Brassica napus HOM05D007213 ORTHO05D009165 3.9e-10 68.9 70 51.4
BraA05t19677Z Brassica rapa HOM05D007213 ORTHO05D009165 3.9e-10 68.9 70 51.4
CANSAT54G2751 Cannabis sativa HOM05D007213 ORTHO05D009165 3.9e-10 68.9 69 55.1
Lsat_1_v5_gn_2_25501 Lactuca sativa HOM05D007213 ORTHO05D009165 3.9e-10 68.9 67 55.2
Atru.chr13.12 Acer truncatum HOM05D007213 ORTHO05D009165 6.7e-10 68.2 70 48.6
Gohir.D05G349200 Gossypium hirsutum HOM05D007213 ORTHO05D009165 8.7e-10 67.8 70 50.0
TPR.G21615 Trifolium pratense HOM05D007213 ORTHO05D009165 8.7e-10 67.8 69 53.6
Gohir.A04G034000 Gossypium hirsutum HOM05D007213 ORTHO05D009165 1.5e-09 67.0 70 50.0
Zm00001eb174530 Zea mays HOM05D007213 ORTHO05D009165 1.5e-09 67.0 64 56.2
Sed0002482 Sechium edule HOM05D007213 ORTHO05D009165 1.9e-09 66.6 71 50.7
SEGI_34531 Sequoiadendron giganteum HOM05D007213 ORTHO05D009165 1.9e-09 66.6 64 54.7
Gorai.009G379100 Gossypium raimondii HOM05D007213 ORTHO05D009165 2.5e-09 66.2 70 50.0
BcaB02g09137 Brassica carinata HOM05D007213 ORTHO05D009165 4.3e-09 65.5 70 50.0
VMungo1215G3163 Vigna mungo HOM05D007213 ORTHO05D009165 4.3e-09 65.5 69 50.7
PGR031G0765 Punica granatum HOM05D007213 ORTHO05D009165 9.7e-09 64.3 56 60.7
ATR0605G010 Amborella trichopoda HOM05D007213 ORTHO05D009165 2.8e-08 62.8 52 59.6
Lj1g0003700 Lotus japonicus HOM05D007213 ORTHO05D009165 2.4e-07 59.7 69 49.3
Thecc.07G095200 Theobroma cacao HOM05D007213 ORTHO05D009165 5.3e-07 58.5 70 44.3


User provided reference genes

Program Settings