Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.4e-205 719.9 540 100.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.2e-164 583.9 547 79.0
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.5e-146 523.9 547 74.8
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 5.5e-141 505.4 542 74.5
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.6e-140 502.7 542 77.9
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.3e-139 500.0 544 71.1
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.0e-139 499.2 544 74.4
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.2e-139 498.8 545 77.4
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.7e-137 493.8 548 72.4
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 6.3e-137 491.9 547 69.3
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.3e-137 491.5 548 72.3
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 7.0e-136 488.4 548 67.9
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 4.5e-135 485.7 552 67.9
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 3.8e-134 482.6 555 67.6
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 3.3e-133 479.6 546 65.8
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 8.0e-132 474.9 542 62.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 1.5e-130 470.7 542 64.2
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 3.4e-130 469.5 548 66.8
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 4.4e-130 469.2 544 71.7
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.7e-129 467.2 548 71.4
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.7e-129 467.2 546 65.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 2.2e-129 466.8 547 69.8
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.2e-129 466.8 550 67.1
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.7e-129 466.1 546 63.2
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 8.3e-129 464.9 545 65.0
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.8e-128 463.8 585 63.6
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.4e-128 463.4 569 62.4
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 5.4e-128 462.2 548 65.3
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 5.0e-126 455.7 546 68.1
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 5.0e-126 455.7 547 67.1
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.6e-126 455.3 547 62.0
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 8.6e-126 454.9 545 67.3
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.5e-125 454.1 551 66.4
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.9e-125 453.8 558 64.2
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 1.6e-124 450.7 529 72.2
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 8.0e-124 448.4 544 68.0
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.8e-123 447.2 546 67.4
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-122 444.5 554 67.7
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.2e-122 444.5 554 72.2
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 2.0e-122 443.7 548 66.8
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 5.8e-122 442.2 572 67.8
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 5.8e-122 442.2 545 62.4
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 2.2e-121 440.3 539 65.5
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.4e-120 436.8 550 65.8
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.0e-120 435.3 547 63.4
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.0e-119 433.7 548 62.4
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 3.0e-118 429.9 547 67.5
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 8.6e-118 428.3 550 70.0
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.1e-117 427.9 541 61.0
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 1.5e-117 427.6 545 66.4
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.9e-117 427.2 545 65.9
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.5e-117 426.8 545 63.5
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 7.3e-117 425.2 536 61.2
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.2e-116 424.5 545 63.5
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 2.1e-116 423.7 552 71.6
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 3.6e-116 422.9 559 58.5
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 8.0e-116 421.8 558 61.1
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.8e-115 420.6 562 62.5
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 2.6e-114 416.8 544 67.6
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 7.5e-114 415.2 547 62.9
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.7e-113 414.1 552 63.2
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.9e-112 410.6 551 65.2
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 4.1e-112 409.5 548 62.4
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.2e-111 407.9 550 69.8
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 4.6e-111 406.0 552 66.8
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 6.0e-111 405.6 546 72.5
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 7.8e-111 405.2 548 58.2
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 7.8e-111 405.2 541 61.6
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.0e-110 404.8 562 64.1
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.0e-110 404.8 564 64.9
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 3.9e-110 402.9 543 61.9
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 7.3e-109 398.7 551 65.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-108 397.9 543 67.6
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 2.8e-108 396.7 547 62.7
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.5e-106 391.0 546 63.6
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 4.4e-106 389.4 556 62.2
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 9.9e-106 388.3 545 64.0
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 2.9e-105 386.7 550 64.0
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 4.9e-105 386.0 551 65.7
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 4.9e-105 386.0 563 64.5
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.2e-104 383.3 542 66.1
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.2e-103 381.3 547 64.5
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 7.8e-103 378.6 549 59.2
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.3e-101 372.9 549 53.2
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.2e-98 364.8 558 63.6
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.2e-98 364.8 555 64.3
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 9.2e-96 355.1 547 60.7
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.6e-95 354.4 588 46.8
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.7e-95 353.6 566 57.8
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.1e-94 349.4 555 63.8
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 3.1e-91 340.1 544 62.5
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.6e-87 326.2 487 67.8
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.3e-86 324.7 543 61.5
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.1e-84 317.4 381 73.0
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.4e-83 314.7 591 53.1
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 9.0e-83 312.0 492 60.2
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 2.2e-81 307.4 465 58.3
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.9e-81 307.0 558 57.9
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.9e-81 306.2 233 84.5
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 7.1e-80 302.4 556 52.3
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.6e-79 301.2 551 53.4
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.8e-78 297.7 567 51.1
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.8e-76 290.4 561 49.2
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.1e-75 287.0 559 49.9
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 9.0e-75 285.4 549 55.6
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 5.8e-74 282.7 165 88.5
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.3e-73 281.6 552 54.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 3.8e-73 280.0 552 54.0
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.4e-73 279.3 234 72.6
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.4e-72 278.1 588 53.2
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 3.2e-72 276.9 560 56.2
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.2e-71 275.0 570 46.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.6e-71 274.6 466 56.0
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 3.5e-71 273.5 165 83.6
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 4.6e-71 273.1 554 50.7
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 9.6e-69 265.4 585 46.2
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.6e-68 264.6 566 52.5
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 8.2e-68 262.3 154 88.3
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.3e-67 259.6 320 61.6
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 9.0e-67 258.8 387 48.3
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.4e-59 235.0 176 72.2
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.3e-54 217.6 165 73.3
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.5e-50 204.9 492 45.3
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 2.1e-47 194.5 537 38.9
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.8e-46 191.4 439 52.4
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 5.1e-46 189.9 272 61.0
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.2e-42 178.7 384 49.0
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.5e-37 161.8 121 75.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 2.6e-37 161.0 269 53.5
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.1e-27 129.0 109 71.6
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.4e-27 128.6 74 82.4
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 2.7e-26 124.4 502 42.4
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 1.3e-25 122.1 128 64.8
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.8e-25 120.6 81 67.9
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.5e-25 119.4 176 57.4
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.7e-23 114.4 106 65.1
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.2e-21 109.0 102 64.7
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-20 105.5 64 89.1
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 6.3e-20 103.2 168 41.7
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 2.9e-17 94.4 103 62.1
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.8e-17 94.0 99 61.6
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.2e-16 89.7 73 71.2
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.2e-16 89.7 73 71.2
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.8e-14 85.1 58 86.2
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.6e-13 81.3 86 58.1
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.9e-12 77.0 46 82.6
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.4e-11 75.5 112 54.5
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-08 65.5 111 73.9
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 7.3e-08 63.2 156 32.1
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 3.6e-07 60.8 74 54.1
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 8.0e-07 59.7 82 47.6
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.8e-06 58.5 81 49.4
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.8e-06 58.5 81 49.4


User provided reference genes

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