Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.0e-84 316.6 155 100.0
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 3.3e-38 162.2 97 84.5
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.7e-26 123.2 97 66.0
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.9e-23 112.1 102 62.7
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.9e-22 109.8 97 61.9
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 4.5e-19 98.6 87 59.8
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.1e-17 94.0 94 54.3
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.4e-17 93.6 96 54.2
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.9e-17 93.2 94 55.3
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.5e-17 92.8 94 59.6
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.5e-17 92.8 94 58.5
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 4.2e-17 92.0 93 57.0
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 7.1e-17 91.3 95 53.7
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.3e-17 90.9 85 54.1
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.3e-17 90.9 85 55.3
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-16 90.5 83 61.4
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.2e-16 90.5 85 58.8
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 2.1e-16 89.7 85 54.1
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 2.7e-16 89.4 114 50.9
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.5e-16 89.0 85 52.9
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.5e-16 89.0 58 65.5
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 4.6e-16 88.6 93 49.5
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.6e-16 88.6 85 52.9
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.1e-16 88.2 106 49.1
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 6.1e-16 88.2 107 48.6
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 7.9e-16 87.8 91 54.9
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 7.9e-16 87.8 95 48.4
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.3e-15 87.0 95 52.6
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.3e-15 87.0 96 51.0
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 2.3e-15 86.3 94 50.0
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.9e-15 85.5 96 51.0
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 5.1e-15 85.1 95 52.6
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 6.7e-15 84.7 85 52.9
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.7e-15 84.3 124 35.5
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 8.7e-15 84.3 116 45.7
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 8.7e-15 84.3 95 53.7
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-14 84.0 93 49.5
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.5e-14 83.6 95 50.5
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.9e-14 83.2 95 51.6
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.5e-14 82.8 95 52.6
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.3e-14 82.4 62 62.9
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.3e-14 82.0 93 51.6
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 5.7e-14 81.6 94 48.9
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 5.7e-14 81.6 92 47.8
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 5.7e-14 81.6 90 46.7
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 7.4e-14 81.3 90 48.9
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 7.4e-14 81.3 58 58.6
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 7.4e-14 81.3 125 41.6
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.7e-14 80.9 95 43.2
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 9.7e-14 80.9 79 58.2
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.7e-14 80.9 91 54.9
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.6e-13 80.1 87 55.2
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-13 80.1 91 41.8
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.2e-13 79.7 89 42.7
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 2.2e-13 79.7 87 50.6
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.2e-13 79.7 94 43.6
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.8e-13 79.3 89 47.2
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.8e-13 79.3 102 46.1
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.8e-13 79.3 102 46.1
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.8e-13 79.3 90 51.1
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 3.7e-13 79.0 83 51.8
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.7e-13 79.0 83 51.8
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 4.8e-13 78.6 97 47.4
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.3e-13 78.2 83 51.8
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.3e-13 78.2 83 51.8
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 6.3e-13 78.2 82 53.7
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.2e-13 77.8 89 49.4
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.2e-13 77.8 92 50.0
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.1e-12 77.4 92 46.7
Actinidia39884 Actinidia chinensis HOM05D000123 ORTHO05D000064 1.1e-12 77.4 78 61.5
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 1.1e-12 77.4 133 38.3
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.1e-12 77.4 100 43.0
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.1e-12 77.4 84 46.4
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.1e-12 77.4 89 46.1
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.1e-12 77.4 95 46.3
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-12 77.0 89 47.2
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 2.4e-12 76.3 118 42.4
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 2.4e-12 76.3 83 50.6
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.4e-12 76.3 94 42.6
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.4e-12 76.3 95 47.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.4e-12 76.3 95 47.4
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.1e-12 75.9 90 46.7
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.1e-12 75.9 94 44.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 3.1e-12 75.9 96 50.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 3.1e-12 75.9 98 42.9
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.1e-12 75.5 95 42.1
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 4.1e-12 75.5 94 46.8
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 6.9e-12 74.7 90 44.4
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 6.9e-12 74.7 95 47.4
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 9.0e-12 74.3 95 44.2
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-11 73.9 91 47.3
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-11 73.9 94 51.1
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.5e-11 73.6 88 45.5
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.5e-11 73.6 108 44.4
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.5e-11 73.6 92 40.2
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.5e-11 73.6 102 43.1
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 2.0e-11 73.2 99 41.4
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 2.0e-11 73.2 95 48.4
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.0e-11 73.2 89 48.3
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 3.4e-11 72.4 92 45.7
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 3.4e-11 72.4 92 45.7
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 4.5e-11 72.0 88 47.7
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 4.5e-11 72.0 92 46.7
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.9e-11 71.6 96 50.0
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.9e-11 71.6 93 46.2
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 7.7e-11 71.2 95 48.4
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.7e-11 71.2 83 49.4
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 7.7e-11 71.2 135 36.3
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 7.7e-11 71.2 93 49.5
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.0e-10 70.9 93 45.2
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 1.3e-10 70.5 92 42.4
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 1.3e-10 70.5 84 41.7
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-10 70.5 93 45.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.3e-10 70.5 97 48.5
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.3e-10 70.5 98 42.9
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.7e-10 70.1 99 44.4
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.7e-10 70.1 40 77.5
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-10 70.1 92 42.4
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.7e-10 70.1 97 40.2
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.2e-10 69.7 74 45.9
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 2.2e-10 69.7 91 42.9
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 2.2e-10 69.7 91 42.9
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.2e-10 69.7 93 39.8
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.2e-10 69.7 93 45.2
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.2e-10 69.7 59 57.6
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 2.9e-10 69.3 90 40.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 2.9e-10 69.3 90 40.0
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 3.8e-10 68.9 89 43.8
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.8e-10 68.9 98 41.8
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 5.0e-10 68.6 99 41.4
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 5.0e-10 68.6 92 42.4
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 5.0e-10 68.6 96 45.8
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 5.0e-10 68.6 95 45.3
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.0e-10 68.6 90 37.8
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 6.5e-10 68.2 96 41.7
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 6.5e-10 68.2 92 40.2
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 8.5e-10 67.8 83 42.2
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 8.5e-10 67.8 94 41.5
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 8.5e-10 67.8 92 43.5
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 8.5e-10 67.8 94 42.6
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 8.5e-10 67.8 80 42.5
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.1e-09 67.4 86 45.3
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.4e-09 67.0 90 38.9
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.4e-09 67.0 83 42.2
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.4e-09 67.0 83 42.2
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.4e-09 67.0 101 41.6
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.4e-09 67.0 101 41.6
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.4e-09 67.0 91 42.9
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.4e-09 67.0 62 50.0
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.4e-09 67.0 95 40.0
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.4e-09 67.0 92 38.0
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.9e-09 66.6 51 54.9
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.9e-09 66.6 88 40.9
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.5e-09 66.2 94 41.5
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.5e-09 66.2 33 84.8
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 3.2e-09 65.9 94 46.8
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 3.2e-09 65.9 38 76.3
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 4.2e-09 65.5 46 58.7
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 4.2e-09 65.5 35 77.1
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 5.5e-09 65.1 99 40.4
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 5.5e-09 65.1 88 50.0
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 9.4e-09 64.3 96 45.8
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.2e-08 63.9 95 48.4
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.2e-08 63.9 82 42.7
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 3.6e-08 62.4 91 44.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.6e-08 62.4 93 39.8
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.6e-08 62.4 95 42.1
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 4.6e-08 62.0 101 39.6
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 4.6e-08 62.0 101 39.6
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 4.6e-08 62.0 96 45.8
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 4.6e-08 62.0 121 33.9
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 7.9e-08 61.2 90 40.0
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.0e-07 60.8 85 42.4
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 1.0e-07 60.8 93 39.8
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.4e-07 60.5 42 66.7
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 1.4e-07 60.5 49 59.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.8e-07 60.1 89 37.1
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.9e-07 58.9 94 40.4
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 6.7e-07 58.2 93 39.8
ClCG01G017770 Citrullus lanatus HOM05D001756 ORTHO05D001581 2.0e-06 56.6 88 39.8
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.0e-06 56.6 81 40.7
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.3e-06 55.8 61 52.5
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 4.3e-06 55.5 43 53.5
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 4.3e-06 55.5 35 62.9


User provided reference genes

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