Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19737 Davidia involucrata HOM05D007654 ORTHO05D009697 1.3e-41 172.6 83 100.0
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 2.2e-20 102.1 55 89.1
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 2.2e-20 102.1 77 66.2
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 2.8e-20 101.7 55 92.7
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 2.4e-19 98.6 55 81.8
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 4.1e-19 97.8 55 83.6
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 2.7e-18 95.1 55 78.2
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 3.5e-18 94.7 55 78.2
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 4.5e-18 94.4 55 78.2
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 5.9e-18 94.0 55 80.0
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 5.9e-18 94.0 54 79.6
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 7.7e-18 93.6 55 80.0
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 1.3e-17 92.8 53 83.0
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 1.7e-17 92.4 55 76.4
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 2.9e-17 91.7 58 72.4
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 2.9e-17 91.7 55 80.0
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 3.8e-17 91.3 55 78.2
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 3.8e-17 91.3 55 74.5
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 6.5e-17 90.5 55 80.0
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 6.5e-17 90.5 55 80.0
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 8.5e-17 90.1 55 76.4
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 8.5e-17 90.1 58 70.7
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 1.1e-16 89.7 54 77.8
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 1.1e-16 89.7 54 79.6
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 1.1e-16 89.7 55 76.4
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 1.1e-16 89.7 66 69.7
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 1.5e-16 89.4 55 76.4
Nitab4.5_0001102g0070 Nicotiana tabacum HOM05D007654 ORTHO05D009697 2.5e-16 88.6 65 67.7
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 2.5e-16 88.6 48 87.5
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 3.2e-16 88.2 53 81.1
Sed0025850 Sechium edule HOM05D007654 ORTHO05D009697 4.2e-16 87.8 55 76.4
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 5.5e-16 87.4 55 76.4
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 5.5e-16 87.4 55 70.9
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 9.4e-16 86.7 78 60.3
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 9.4e-16 86.7 55 76.4
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 1.2e-15 86.3 52 76.9
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 1.6e-15 85.9 49 79.6
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 1.6e-15 85.9 55 76.4
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 3.6e-15 84.7 87 55.2
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 3.6e-15 84.7 55 74.5
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 3.6e-15 84.7 53 77.4
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 4.7e-15 84.3 55 69.1
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 4.7e-15 84.3 55 69.1
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 6.1e-15 84.0 53 77.4
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 6.1e-15 84.0 55 72.7
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 8.0e-15 83.6 54 68.5
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 1.0e-14 83.2 45 86.7
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 1.4e-14 82.8 53 75.5
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 1.8e-14 82.4 48 81.2
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 1.8e-14 82.4 53 75.5
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 2.3e-14 82.0 53 75.5
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 2.3e-14 82.0 53 75.5
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 2.3e-14 82.0 53 67.9
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 3.0e-14 81.6 53 75.5
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 3.0e-14 81.6 53 69.8
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 4.0e-14 81.3 46 87.0
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 4.0e-14 81.3 56 71.4
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 4.0e-14 81.3 56 71.4
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 4.0e-14 81.3 43 86.0
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 8.8e-14 80.1 53 73.6
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 8.8e-14 80.1 53 73.6
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 8.8e-14 80.1 52 75.0
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 1.2e-13 79.7 53 71.7
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 1.2e-13 79.7 44 84.1
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 1.2e-13 79.7 54 68.5
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 1.2e-13 79.7 52 69.2
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 1.5e-13 79.3 53 71.7
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 1.5e-13 79.3 53 71.7
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 2.6e-13 78.6 53 71.7
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 2.6e-13 78.6 44 84.1
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 4.4e-13 77.8 53 67.9
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 5.7e-13 77.4 42 85.7
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 5.7e-13 77.4 44 81.8
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 5.7e-13 77.4 56 67.9
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 7.5e-13 77.0 52 67.3
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 9.8e-13 76.6 54 66.7
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 2.2e-12 75.5 44 81.8
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 2.8e-12 75.1 52 61.5
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 3.7e-12 74.7 44 75.0
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 3.7e-12 74.7 44 79.5
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 3.7e-12 74.7 54 68.5
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 1.4e-11 72.8 56 67.9
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 1.4e-11 72.8 54 66.7
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 3.1e-11 71.6 39 87.2
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 2.7e-10 68.6 40 85.0
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 3.5e-10 68.2 36 91.7
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 4.5e-10 67.8 35 88.6
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 5.9e-10 67.4 37 89.2
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 5.9e-10 67.4 38 78.9
vmacro14982 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 5.5e-08 60.8 36 80.6
FvH4_2g24970 Fragaria vesca HOM05D007654 ORTHO05D009697 7.2e-08 60.5 35 80.0
Sabra14G0099700 Salix brachista HOM05D000091 ORTHO05D003679 9.4e-08 60.1 35 77.1
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 1.2e-07 59.7 40 67.5
AUR62008575 Chenopodium quinoa HOM05D000096 ORTHO05D000045 8.0e-07 57.0 35 68.6
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 8.0e-07 57.0 35 68.6
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 1.8e-06 55.8 37 64.9
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 8.8e-06 53.5 34 67.6


User provided reference genes

Program Settings