Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19732 Davidia involucrata HOM05D000179 ORTHO05D000107 4.7e-203 711.1 380 100.0
Dinv33022 Davidia involucrata HOM05D001646 ORTHO05D001572 4.0e-122 442.2 379 72.0
Hma1.2p1_0399F.1_g143920 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 3.7e-99 365.9 371 62.5
Thecc.01G294200 Theobroma cacao HOM05D000179 ORTHO05D000107 1.6e-94 350.5 375 61.1
Duzib138G1955 Durio zibethinus HOM05D000179 ORTHO05D000107 8.8e-93 344.7 373 60.1
Manes.05G065500 Manihot esculenta HOM05D000179 ORTHO05D000107 3.7e-91 339.3 383 59.5
Duzib133G0348 Durio zibethinus HOM05D000179 ORTHO05D000107 2.2e-88 330.1 374 58.0
Lj1A35T64 Lonicera japonica HOM05D000179 ORTHO05D000107 8.0e-86 321.6 366 57.1
Actinidia21061 Actinidia chinensis HOM05D000179 ORTHO05D000107 5.7e-84 315.5 364 58.8
TAR362G0972 Trochodendron aralioides HOM05D000179 ORTHO05D000107 4.8e-83 312.4 388 56.2
Gorai.007G130100 Gossypium raimondii HOM05D000179 ORTHO05D000107 4.1e-82 309.3 375 57.9
Gorai.004G088400 Gossypium raimondii HOM05D000179 ORTHO05D000107 9.1e-82 308.1 367 55.6
COL.COLO4_07997 Corchorus olitorius HOM05D000179 ORTHO05D000107 3.5e-81 306.2 374 58.0
Gohir.D11G121400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 5.9e-81 305.4 371 58.5
QL12p030551 Quercus lobata HOM05D000179 ORTHO05D000107 5.9e-81 305.4 386 55.4
Gohir.D08G084000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.7e-80 303.9 367 55.0
CSS0039057 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.9e-79 300.4 362 58.6
Gohir.A11G116200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 9.4e-79 298.1 375 55.5
Potri.002G208444 Populus trichocarpa HOM05D000179 ORTHO05D000107 9.4e-79 298.1 385 55.6
Gohir.A08G074900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.7e-78 296.6 366 53.6
Potri.014G132700 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.0e-77 294.7 384 54.7
TAR633G2053 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.3e-77 293.5 372 53.2
Oeu046706.1 Olea europaea HOM05D000179 ORTHO05D000107 3.4e-76 289.7 356 53.4
Nn3g21401 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.5e-73 279.6 393 52.9
Actinidia32245 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.9e-71 273.9 363 53.2
DCAR_012403 Daucus carota HOM05D000179 ORTHO05D000107 2.8e-70 270.0 366 54.9
TAR365G0896 Trochodendron aralioides HOM05D000179 ORTHO05D000107 4.9e-67 259.2 378 53.2
CSS0011640 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.4e-66 256.9 289 60.9
GSVIVG01010961001 Vitis vinifera HOM05D000179 ORTHO05D000107 2.4e-66 256.9 362 50.8
CiPaw.07G103800 Carya illinoinensis HOM05D000179 ORTHO05D000107 5.4e-66 255.8 352 54.5
DCAR_002807 Daucus carota HOM05D000179 ORTHO05D000107 2.0e-65 253.8 356 53.7
TWI59G0153 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.0e-64 251.5 407 51.1
Cpa.g.sc9.191 Carica papaya HOM05D000179 ORTHO05D000107 1.7e-64 250.8 433 47.1
Aqoxy5G00698 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 1.5e-63 247.7 398 45.7
TWI23G0643 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 5.8e-60 235.7 383 48.6
VMungo1383G3472 Vigna mungo HOM05D000179 ORTHO05D000107 5.8e-60 235.7 369 48.0
Phvul.001G204700 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.7e-59 234.2 368 47.6
Atru.chr5.1229 Acer truncatum HOM05D000179 ORTHO05D000107 4.9e-59 232.6 399 48.9
Actinidia09161 Actinidia chinensis HOM05D000179 ORTHO05D000107 8.3e-59 231.9 364 48.6
Cc01_g20530 Coffea canephora HOM05D000179 ORTHO05D000107 1.9e-58 230.7 357 48.5
Ciclev10023420m.g Citrus clementina HOM05D000179 ORTHO05D000107 2.4e-58 230.3 402 48.5
vmacro02486 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 3.2e-58 229.9 296 57.1
Cfa005984 Carpinus fangiana HOM05D000179 ORTHO05D000107 1.0e-56 224.9 348 50.0
Aqoxy2G03027 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 5.0e-56 222.6 373 47.7
Glyma.19G208900 Glycine max HOM05D000179 ORTHO05D000107 6.6e-56 222.2 376 45.5
Nitab4.5_0001697g0070 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.1e-55 221.5 365 48.8
ECA248G0948 Erigeron canadensis HOM05D000179 ORTHO05D000107 1.2e-54 218.0 377 46.2
Lj1g0027872 Lotus japonicus HOM05D000179 ORTHO05D000107 2.8e-54 216.9 377 45.6
Phvul.007G165133 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 6.2e-54 215.7 374 45.5
Haze_04859 Corylus avellana HOM05D000179 ORTHO05D000107 1.1e-53 214.9 347 50.7
CAN.G1562.5 Capsicum annuum HOM05D000179 ORTHO05D000107 3.1e-53 213.4 378 45.0
Nitab4.5_0001447g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.0e-53 213.0 356 47.2
Glyma.03G211700 Glycine max HOM05D000179 ORTHO05D000107 1.2e-52 211.5 377 44.8
Oeu047465.1 Olea europaea HOM05D000179 ORTHO05D000107 6.4e-51 205.7 331 47.7
Rhsim13G0014900 Rhododendron simsii HOM05D000179 ORTHO05D000107 8.3e-51 205.3 375 44.8
Solyc09g074780.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 1.2e-49 201.4 363 43.5
Gohir.D12G009800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.6e-49 201.1 351 47.3
Gorai.008G009800 Gossypium raimondii HOM05D000179 ORTHO05D000107 3.5e-49 199.9 353 46.7
CANSAT25G2031 Cannabis sativa HOM05D000179 ORTHO05D000107 6.0e-49 199.1 401 45.1
Prupe.8G255800 Prunus persica HOM05D000179 ORTHO05D000107 1.7e-48 197.6 421 43.0
PGSC0003DMG400011365 Solanum tuberosum HOM05D000179 ORTHO05D000107 5.1e-48 196.1 360 44.2
HanXRQChr11g0330071 Helianthus annuus HOM05D000179 ORTHO05D000107 6.6e-48 195.7 372 44.1
Sopen09g029630 Solanum pennellii HOM05D000179 ORTHO05D000107 1.9e-47 194.1 372 43.0
Gohir.A12G009800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.1e-46 190.7 354 45.2
RcHm_v2.0_Chr6g0293211 Rosa chinensis HOM05D000179 ORTHO05D000107 8.1e-46 188.7 397 44.8
Lsat_1_v5_gn_5_189320 Lactuca sativa HOM05D000179 ORTHO05D000107 4.0e-45 186.4 380 42.6
MSTRG.18177 Avicennia marina HOM05D000179 ORTHO05D000107 1.2e-44 184.9 348 43.7
MD03G1283900 Malus domestica HOM05D000179 ORTHO05D000107 1.2e-44 184.9 417 41.2
Glyma.02G153900 Glycine max HOM05D000179 ORTHO05D000107 2.0e-44 184.1 373 42.1
Nn5g30062 Nelumbo nucifera HOM05D000179 ORTHO05D000107 4.4e-44 183.0 389 42.2
PSO210G6278 Papaver somniferum HOM05D000179 ORTHO05D000107 2.2e-43 180.6 430 41.2
MSTRG.21611 Avicennia marina HOM05D000179 ORTHO05D000107 6.4e-43 179.1 358 42.5
TPR.G9290 Trifolium pratense HOM05D000179 ORTHO05D000107 3.5e-41 173.3 370 43.5
Ca_09135_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 3.0e-40 170.2 375 41.3
Eucgr.H01190 Eucalyptus grandis HOM05D000179 ORTHO05D000107 8.6e-40 168.7 416 41.8
Sabra13G0021600 Salix brachista HOM05D000179 ORTHO05D000107 3.3e-39 166.8 362 40.6
GSVIVG01031112001 Vitis vinifera HOM05D000179 ORTHO05D000107 3.3e-39 166.8 366 39.3
Duzib177G0852 Durio zibethinus HOM05D000179 ORTHO05D000107 7.3e-39 165.6 359 40.4
FAN15G0210 Fragaria x ananassa HOM05D000179 ORTHO05D000107 7.3e-39 165.6 398 41.2
Lj5g0020678 Lotus japonicus HOM05D000179 ORTHO05D000107 7.3e-39 165.6 346 41.6
Potri.013G019200 Populus trichocarpa HOM05D000179 ORTHO05D000107 7.3e-39 165.6 356 42.4
FAN24G0694 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.2e-38 164.9 400 41.0
FAN27G2968 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.8e-38 163.7 401 40.4
FAN20G0439 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.6e-38 163.3 401 40.6
Peaxi162Scf00067g01614 Petunia axillaris HOM05D000179 ORTHO05D000107 8.1e-38 162.2 371 37.2
ECA247G4084 Erigeron canadensis HOM05D000179 ORTHO05D000107 1.1e-37 161.8 358 41.6
MD11G1302300 Malus domestica HOM05D000179 ORTHO05D000107 1.4e-37 161.4 388 41.5
Dinv40306 Davidia involucrata HOM05D001646 ORTHO05D001572 1.8e-37 161.0 377 40.6
PGR119G1220 Punica granatum HOM05D000179 ORTHO05D000107 1.8e-37 161.0 411 41.4
Hma1.2p1_0209F.1_g088820 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 2.4e-37 160.6 197 57.9
Manes.08G119600 Manihot esculenta HOM05D000179 ORTHO05D000107 4.0e-37 159.8 349 42.1
FvH4_c6g00070 Fragaria vesca HOM05D000179 ORTHO05D000107 6.8e-37 159.1 401 40.6
Thecc.05G310800 Theobroma cacao HOM05D000179 ORTHO05D000107 8.9e-37 158.7 364 41.5
Duzib106G0864 Durio zibethinus HOM05D000179 ORTHO05D000107 1.2e-36 158.3 363 41.3
QL03p012801 Quercus lobata HOM05D000179 ORTHO05D000107 2.6e-36 157.1 357 40.6
Psat3g023360 Pisum sativum HOM05D000179 ORTHO05D000107 4.4e-36 156.4 371 42.0
arahy.Tifrunner.gnm1.ann1.EPUL7W Arachis hypogaea HOM05D000179 ORTHO05D000107 7.6e-36 155.6 393 37.9
arahy.Tifrunner.gnm1.ann1.AY8SNM Arachis hypogaea HOM05D000179 ORTHO05D000107 1.3e-35 154.8 386 38.3
Potri.005G027200 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.1e-34 151.8 363 38.6
Oeu013023.1 Olea europaea HOM05D000179 ORTHO05D000107 2.4e-34 150.6 216 49.5
CiPaw.08G098700 Carya illinoinensis HOM05D000179 ORTHO05D000107 6.0e-33 146.0 255 48.2
COL.COLO4_10490 Corchorus olitorius HOM05D000179 ORTHO05D000107 7.8e-33 145.6 356 40.7
Manes.09G169000 Manihot esculenta HOM05D000179 ORTHO05D000107 2.1e-30 137.5 345 39.4
CiPaw.08G163100 Carya illinoinensis HOM05D000179 ORTHO05D000107 3.1e-29 133.7 359 38.4
CiPaw.07G019800 Carya illinoinensis HOM05D000179 ORTHO05D000107 2.0e-28 131.0 361 36.8
CSS0050321 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 2.2e-27 127.5 366 37.2
Gohir.D11G276500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 2.9e-27 127.1 380 37.6
Gorai.007G298600 Gossypium raimondii HOM05D000179 ORTHO05D000107 6.4e-27 125.9 378 37.6
CDE08G1400 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 1.9e-26 124.4 345 37.4
Cfa006610 Carpinus fangiana HOM05D000179 ORTHO05D000107 4.2e-26 123.2 373 37.8
Sabra05G0032500 Salix brachista HOM05D000179 ORTHO05D000107 1.6e-25 121.3 353 36.0
HanXRQChr10g0283921 Helianthus annuus HOM05D000179 ORTHO05D222937 8.7e-24 115.5 320 36.9
Glyma.20G235100 Glycine max HOM05D000179 ORTHO05D000107 1.5e-23 114.8 317 40.7
Haze_04165 Corylus avellana HOM05D000179 ORTHO05D000107 1.6e-22 111.3 383 37.6
ATR0706G277 Amborella trichopoda HOM05D000179 ORTHO05D000107 2.8e-22 110.5 360 36.1
Phvul.007G196100 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.4e-21 108.2 315 37.5
Migut.D00185 Erythranthe guttata HOM05D000179 ORTHO05D000107 1.8e-21 107.8 368 35.1
SGA_v2.0_scaffold1G00387 Striga asiatica HOM05D000179 ORTHO05D000107 1.8e-21 107.8 348 36.2
VMungo0720G2215 Vigna mungo HOM05D000179 ORTHO05D000107 4.5e-20 103.2 307 38.8
Nitab4.5_0008283g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.2e-19 100.9 343 34.4
Nitab4.5_0002344g0140 Nicotiana tabacum HOM05D000179 ORTHO05D000107 8.4e-19 99.0 316 34.5
Gohir.A11G266200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.1e-18 98.6 365 33.4
MD12G1216800 Malus domestica HOM05D000179 ORTHO05D000107 4.2e-18 96.7 334 33.5
PGR083G0435 Punica granatum HOM05D000179 ORTHO05D000107 1.6e-17 94.7 369 33.6
Glyma.10G153200 Glycine max HOM05D000179 ORTHO05D000107 7.9e-17 92.4 314 37.6
MD04G1203000 Malus domestica HOM05D000179 ORTHO05D000107 1.8e-16 91.3 333 33.3
Eucgr.B01936 Eucalyptus grandis HOM05D000179 ORTHO05D000107 2.3e-16 90.9 357 32.2
Cpa.g.sc48.75 Carica papaya HOM05D000179 ORTHO05D000107 3.9e-16 90.1 381 31.2
Lj1g0011973 Lotus japonicus HOM05D000179 ORTHO05D000107 1.5e-15 88.2 292 35.6
Ciclev10000982m.g Citrus clementina HOM05D000179 ORTHO05D000107 3.3e-15 87.0 326 31.6
Peaxi162Scf00037g00092 Petunia axillaris HOM05D000179 ORTHO05D000107 5.6e-15 86.3 344 31.7
Ca_10119_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 1.3e-14 85.1 314 33.1
Cc02_g31070 Coffea canephora HOM05D000179 ORTHO05D000107 3.7e-14 83.6 328 31.1
Phvul.006G090800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 4.8e-14 83.2 337 34.4
Psat6g149840 Pisum sativum HOM05D000179 ORTHO05D000107 1.4e-13 81.6 310 31.6
TPR.G6040 Trifolium pratense HOM05D000179 ORTHO05D000107 5.3e-13 79.7 266 33.1
Sopen01g042900 Solanum pennellii HOM05D000179 ORTHO05D000107 6.9e-13 79.3 336 29.5
Glyma.19G234500 Glycine max HOM05D000179 ORTHO05D000107 3.4e-12 77.0 300 35.7
Prupe.6G323100 Prunus persica HOM05D000179 ORTHO05D000107 4.5e-12 76.6 323 31.3
arahy.Tifrunner.gnm1.ann1.76HL2D Arachis hypogaea HOM05D000179 ORTHO05D000107 1.3e-11 75.1 360 31.4
PGSC0003DMG400024700 Solanum tuberosum HOM05D000179 ORTHO05D000107 1.3e-11 75.1 337 30.9
Glyma.03G236600 Glycine max HOM05D000179 ORTHO05D000107 1.7e-11 74.7 323 32.2
VMungo0540G0697 Vigna mungo HOM05D000179 ORTHO05D000107 3.8e-11 73.6 345 31.9
HanXRQChr03g0079121 Helianthus annuus HOM05D000179 ORTHO05D000107 6.5e-11 72.8 305 31.1
Hma1.2p1_1334F.1_g276280 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 1.1e-10 72.0 336 31.8
Lalb_Chr06g0167651 Lupinus albus HOM05D000179 ORTHO05D000107 1.4e-10 71.6 306 31.7
FAN02G2057 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.2e-10 70.5 341 32.8
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 9.3e-10 68.9 320 30.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 2.1e-09 67.8 320 33.8
RcHm_v2.0_Chr3g0455311 Rosa chinensis HOM05D000179 ORTHO05D000107 2.7e-09 67.4 321 32.7
FAN14G2277 Fragaria x ananassa HOM05D000179 ORTHO05D000107 4.6e-09 66.6 348 33.3
Solyc01g099340.3 Solanum lycopersicum HOM05D000179 ORTHO05D000107 4.6e-09 66.6 336 27.7
CAN.G1034.51 Capsicum annuum HOM05D000179 ORTHO05D000107 6.0e-09 66.2 345 29.3
HanXRQChr09g0250211 Helianthus annuus HOM05D000179 ORTHO05D000107 6.0e-09 66.2 320 29.7
Lj5g0010061 Lotus japonicus HOM05D000179 ORTHO05D000107 6.0e-09 66.2 300 32.0
Actinidia24842 Actinidia chinensis HOM05D000179 ORTHO05D000107 1.3e-08 65.1 194 36.6
Actinidia30575 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.3e-08 64.3 309 28.8
FAN09G1708 Fragaria x ananassa HOM05D000179 ORTHO05D000107 2.3e-08 64.3 320 34.1
CsaV3_1G038890 Cucumis sativus L. HOM05D000179 ORTHO05D000107 6.7e-08 62.8 158 38.6
MELO3C016043.2 Cucumis melo HOM05D000179 ORTHO05D000107 8.7e-08 62.4 352 29.0
Cc03_g14020 Coffea canephora HOM05D000179 ORTHO05D000107 2.1e-06 57.8 332 27.7
FvH4_6g06270 Fragaria vesca HOM05D000179 ORTHO05D000107 2.1e-06 57.8 347 31.7
arahy.Tifrunner.gnm1.ann1.108W4S Arachis hypogaea HOM05D000179 ORTHO05D000107 2.8e-06 57.4 315 32.4
Hma1.2p1_0738F.1_g210900 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 4.8e-06 56.6 276 30.4


User provided reference genes

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