Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 2070.8 1020 100.0
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1479.9 1017 71.8
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1455.3 984 72.7
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1429.8 984 71.7
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 0.0e+00 1328.5 1023 65.1
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 0.0e+00 1322.8 1024 64.3
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 0.0e+00 1290.0 1007 62.1
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1289.2 1047 61.5
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 0.0e+00 1275.0 1005 61.9
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1272.7 1011 62.8
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 0.0e+00 1262.7 1022 61.1
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 0.0e+00 1232.2 1015 61.8
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1230.3 1013 60.2
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 0.0e+00 1230.3 1014 60.2
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 0.0e+00 1228.8 1013 60.0
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1224.9 1004 60.7
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1218.0 1013 60.0
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 0.0e+00 1216.8 1016 59.2
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 0.0e+00 1209.1 1014 59.3
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 0.0e+00 1198.0 1020 58.9
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 0.0e+00 1192.6 1017 61.0
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 0.0e+00 1185.6 1019 59.4
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 0.0e+00 1170.2 1136 54.8
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 0.0e+00 1162.1 1004 57.9
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 0.0e+00 1151.0 982 59.6
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 0.0e+00 1149.4 1011 56.5
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 0.0e+00 1138.6 1014 56.4
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 0.0e+00 1134.8 1016 56.8
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 0.0e+00 1132.9 1019 57.0
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 0.0e+00 1111.7 1014 56.3
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 0.0e+00 1104.0 1007 55.8
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 0.0e+00 1098.6 1020 55.5
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 0.0e+00 1097.8 1025 53.6
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 0.0e+00 1095.9 1007 56.5
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 0.0e+00 1089.7 1022 53.5
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 0.0e+00 1083.2 979 57.1
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 0.0e+00 1075.1 1017 52.4
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 9.0e-310 1067.0 1022 52.3
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.2e-309 1066.6 1014 52.9
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 5.8e-309 1064.3 938 56.8
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 8.4e-308 1060.4 1018 51.8
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 1.9e-307 1059.3 1021 53.1
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 3.2e-307 1058.5 1021 52.0
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 2.1e-306 1055.8 838 60.1
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 2.7e-306 1055.4 1025 54.6
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 1.0e-305 1053.5 1018 52.0
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 3.3e-304 1048.5 997 53.9
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 1.6e-303 1046.2 1017 51.1
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.4e-302 1043.1 936 56.5
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.2e-301 1040.0 1001 51.8
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 4.5e-301 1038.1 1019 50.9
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 6.5e-300 1034.2 999 51.8
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 6.5e-300 1034.2 1021 51.8
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 1.1e-296 1023.5 1024 53.1
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 1.1e-296 1023.5 1002 52.9
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 2.2e-295 1019.2 1018 52.4
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 3.7e-295 1018.5 1013 50.1
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 8.2e-295 1017.3 1006 50.3
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 2.4e-294 1015.8 1013 50.0
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 4.1e-294 1015.0 1000 51.3
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 5.9e-293 1011.1 1000 49.8
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 3.1e-286 988.8 1005 49.3
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 5.3e-286 988.0 1013 48.6
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 9.1e-286 987.3 749 62.6
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 8.5e-284 980.7 1014 48.9
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 4.2e-283 978.4 1081 52.5
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 2.1e-282 976.1 1015 48.6
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.4e-281 973.4 1015 48.7
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 8.8e-273 944.1 921 52.1
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.4e-272 941.8 936 53.0
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 8.5e-268 927.5 1011 48.9
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.9e-252 875.9 830 53.5
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 2.3e-249 866.3 823 54.6
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.6e-245 853.6 883 49.4
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 5.8e-240 835.1 1015 43.5
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 6.6e-236 821.6 857 49.8
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 8.1e-234 814.7 1005 43.3
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 7.1e-230 801.6 750 51.3
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.0e-228 797.7 1015 42.0
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 2.3e-225 786.6 752 52.5
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 1.4e-222 777.3 841 47.6
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.3e-215 754.2 999 42.4
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.7e-207 727.2 719 49.1
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 1.2e-205 721.1 793 49.2
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 5.6e-203 712.2 716 47.9
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 7.4e-203 711.8 576 61.3
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.1e-185 654.8 1011 38.5
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.2e-182 642.9 580 56.2
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 2.7e-152 543.9 756 41.0
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.4e-148 531.6 437 60.0
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.5e-144 516.9 429 57.8
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 3.8e-135 486.9 873 34.9
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.3e-111 407.9 381 55.1
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 8.1e-109 399.4 488 49.4
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 6.4e-106 389.8 1013 29.9
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 2.1e-93 348.2 990 28.0
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 8.4e-90 336.3 1041 26.8
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 2.4e-84 318.2 533 38.5
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 2.9e-82 311.2 194 70.1
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 4.2e-81 307.4 252 60.3
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 4.5e-75 287.3 193 68.9
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 6.0e-72 276.9 443 38.4
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 9.7e-70 269.6 313 40.9
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 1.8e-68 265.4 235 54.9
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 3.4e-67 261.2 223 60.1
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 3.6e-64 251.1 427 35.6
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 4.1e-60 237.7 143 79.0
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.2e-56 226.1 231 51.9
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.9e-51 207.2 174 58.6
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.9e-50 204.9 195 56.4
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 6.5e-50 203.8 145 64.1
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 7.2e-49 200.3 200 50.0
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 6.7e-47 193.7 140 61.4
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 1.2e-32 146.4 112 60.7
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 1.8e-31 142.5 253 33.2
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 2.3e-31 142.1 148 52.7
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 8.8e-31 140.2 148 52.0
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 2.4e-28 132.1 93 64.5
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 3.6e-24 118.2 157 41.4
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 3.0e-23 115.2 94 57.4
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 3.1e-20 105.1 185 38.4
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 3.8e-18 98.2 99 44.4
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 6.8e-15 87.4 126 42.9
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 1.3e-13 83.2 157 33.8
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.9e-13 82.0 78 50.0
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 6.4e-13 80.9 47 72.3
Glyma.13G098900 Glycine max HOM05D005971 ORTHO05D007459 4.7e-08 64.7 66 48.5
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 1.4e-07 63.2 55 60.0
Glyma.13G052500 Glycine max HOM05D005971 ORTHO05D007459 1.8e-07 62.8 66 47.0


User provided reference genes

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