Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 1.6e-51 205.7 93 100.0
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 2.3e-18 95.5 92 52.2
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 9.6e-17 90.1 100 53.0
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 9.6e-17 90.1 92 56.5
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 8.1e-16 87.0 93 51.6
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 3.1e-15 85.1 95 54.7
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 8.9e-15 83.6 94 55.3
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 2.6e-14 82.0 84 53.6
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.2e-13 79.0 93 50.5
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.2e-13 79.0 76 57.9
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.9e-13 78.6 81 55.6
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.8e-13 78.2 93 47.3
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 6.4e-13 77.4 81 54.3
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.9e-12 75.9 96 45.8
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.4e-12 75.5 58 67.2
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 2.4e-12 75.5 58 67.2
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 2.4e-12 75.5 58 67.2
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 3.2e-12 75.1 93 49.5
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 3.2e-12 75.1 83 51.8
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 5.4e-12 74.3 61 62.3
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.4e-12 74.3 86 51.2
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 5.4e-12 74.3 95 49.5
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 7.1e-12 73.9 93 52.7
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 7.1e-12 73.9 83 49.4
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 7.1e-12 73.9 58 69.0
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 9.3e-12 73.6 83 51.8
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.2e-11 73.2 93 48.4
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.1e-11 72.4 89 52.8
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 2.1e-11 72.4 61 60.7
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 2.1e-11 72.4 93 49.5
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 2.7e-11 72.0 93 48.4
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 3.5e-11 71.6 59 64.4
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 3.5e-11 71.6 59 64.4
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 3.5e-11 71.6 80 52.5
QL11p017947 Quercus lobata HOM05D002385 ORTHO05D002245 3.5e-11 71.6 102 46.1
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 4.6e-11 71.2 61 60.7
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 4.6e-11 71.2 61 60.7
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.6e-11 71.2 61 60.7
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.6e-11 71.2 61 60.7
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 6.0e-11 70.9 61 59.0
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 6.0e-11 70.9 65 60.0
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 6.0e-11 70.9 56 60.7
Lsat_1_v5_gn_1_82281 Lactuca sativa HOM05D019240 ORTHO05D002245 7.8e-11 70.5 94 50.0
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 1.0e-10 70.1 61 60.7
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 1.0e-10 70.1 61 60.7
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 1.0e-10 70.1 65 56.9
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 1.0e-10 70.1 61 60.7
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 1.0e-10 70.1 96 46.9
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 1.3e-10 69.7 93 46.2
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 1.3e-10 69.7 87 46.0
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.7e-10 69.3 58 67.2
Dinv05962 Davidia involucrata HOM05D014462 ORTHO05D018947 1.7e-10 69.3 104 42.3
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 2.3e-10 68.9 60 63.3
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 3.0e-10 68.6 78 52.6
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 3.0e-10 68.6 87 48.3
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.9e-10 68.2 92 47.8
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.9e-10 68.2 93 49.5
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 3.9e-10 68.2 61 59.0
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 3.9e-10 68.2 61 59.0
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 3.9e-10 68.2 61 59.0
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 3.9e-10 68.2 56 58.9
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 3.9e-10 68.2 51 64.7
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 5.1e-10 67.8 77 50.6
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 8.7e-10 67.0 97 49.5
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 8.7e-10 67.0 97 49.5
Sp1g04210 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.1e-09 66.6 71 50.7
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 1.5e-09 66.2 61 55.7
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 1.5e-09 66.2 61 55.7
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.5e-09 66.2 50 64.0
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.5e-09 66.2 89 48.3
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.9e-09 65.9 64 57.8
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 1.9e-09 65.9 93 46.2
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 1.9e-09 65.9 92 46.7
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 1.9e-09 65.9 95 47.4
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 2.5e-09 65.5 58 58.6
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.5e-09 65.5 50 62.0
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.5e-09 65.5 93 46.2
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.3e-09 65.1 42 73.8
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 4.3e-09 64.7 104 44.2
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 4.3e-09 64.7 94 47.9
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 5.6e-09 64.3 61 54.1
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.6e-09 64.3 65 56.9
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.6e-09 64.3 61 59.0
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 5.6e-09 64.3 94 46.8
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.3e-09 63.9 93 52.7
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.3e-09 63.9 93 52.7
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 9.6e-09 63.5 94 47.9
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 1.3e-08 63.2 94 45.7
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.6e-08 62.8 91 48.4
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 1.6e-08 62.8 59 55.9
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 2.8e-08 62.0 81 51.9
A10p04050 Brassica napus HOM05D002385 ORTHO05D002245 2.8e-08 62.0 71 49.3
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 2.8e-08 62.0 93 43.0
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 2.8e-08 62.0 93 44.1
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 2.8e-08 62.0 89 44.9
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 2.8e-08 62.0 93 48.4
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 3.6e-08 61.6 85 49.4
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 3.6e-08 61.6 93 44.1
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 3.6e-08 61.6 93 43.0
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 4.8e-08 61.2 83 53.0
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 4.8e-08 61.2 93 43.0
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 4.8e-08 61.2 76 51.3
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 6.2e-08 60.8 93 45.2
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 6.2e-08 60.8 93 45.2
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 6.2e-08 60.8 93 45.2
Thecc.07G151900 Theobroma cacao HOM05D021429 ORTHO05D022417 6.2e-08 60.8 77 42.9
CiPaw.09G078200 Carya illinoinensis HOM05D002385 ORTHO05D002245 8.1e-08 60.5 60 55.0
CiPaw.11G059800 Carya illinoinensis HOM05D014462 ORTHO05D018947 8.1e-08 60.5 93 46.2
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 8.1e-08 60.5 91 47.3
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 8.1e-08 60.5 95 43.2
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 8.1e-08 60.5 95 43.2
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.1e-08 60.5 93 43.0
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.1e-07 60.1 93 48.4
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.4e-07 59.7 94 44.7
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.4e-07 59.7 97 45.4
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 1.4e-07 59.7 93 41.9
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.8e-07 59.3 62 53.2
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 1.8e-07 59.3 89 40.4
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.8e-07 59.3 93 44.1
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.4e-07 58.9 50 60.0
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.4e-07 58.9 57 52.6
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 2.4e-07 58.9 82 43.9
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 2.4e-07 58.9 83 50.6
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 2.4e-07 58.9 83 50.6
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 3.1e-07 58.5 58 56.9
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 3.1e-07 58.5 95 42.1
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 3.1e-07 58.5 94 42.6
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 3.1e-07 58.5 51 62.7
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 4.0e-07 58.2 94 44.7
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 4.0e-07 58.2 50 62.0
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 4.0e-07 58.2 60 51.7
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 4.0e-07 58.2 106 40.6
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 5.3e-07 57.8 77 48.1
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 5.3e-07 57.8 82 46.3
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 5.3e-07 57.8 77 46.8
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 5.3e-07 57.8 67 55.2
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 6.9e-07 57.4 64 54.7
AL1G15140 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 9.0e-07 57.0 71 46.5
AT1G05340 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 9.0e-07 57.0 71 46.5
CiPaw.15G117700 Carya illinoinensis HOM05D019240 ORTHO05D002245 9.0e-07 57.0 73 50.7
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 9.0e-07 57.0 66 54.5
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 9.0e-07 57.0 94 46.8
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 9.0e-07 57.0 90 44.4
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 1.2e-06 56.6 58 55.2
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 1.2e-06 56.6 58 55.2
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 1.2e-06 56.6 53 58.5
Gorai.009G355300 Gossypium raimondii HOM05D021429 ORTHO05D022417 1.2e-06 56.6 81 43.2
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.5e-06 56.2 91 45.1
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 1.5e-06 56.2 93 41.9
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 1.5e-06 56.2 69 49.3
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.0e-06 55.8 59 57.6
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.0e-06 55.8 59 57.6
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.0e-06 55.8 95 44.2
Phvul.005G057400 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.0e-06 55.8 78 48.7
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 2.0e-06 55.8 56 55.4
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.6e-06 55.5 91 42.9
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.6e-06 55.5 94 45.7
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.6e-06 55.5 93 41.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.6e-06 55.5 93 41.9
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 3.4e-06 55.1 92 43.5
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 3.4e-06 55.1 77 46.8
Cfa021234 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.4e-06 55.1 44 68.2
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 3.4e-06 55.1 65 49.2
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.4e-06 55.1 76 48.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 3.4e-06 55.1 55 56.4
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 3.4e-06 55.1 81 44.4
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 3.4e-06 55.1 57 50.9
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.4e-06 55.1 60 56.7
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.4e-06 54.7 91 41.8
CARHR045780 Cardamine hirsuta HOM05D014824 ORTHO05D002245 4.4e-06 54.7 62 54.8
Haze_12229 Corylus avellana HOM05D002385 ORTHO05D002245 4.4e-06 54.7 74 50.0
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 4.4e-06 54.7 57 50.9
HPP92_004187 Vanilla planifolia HOM05D002385 ORTHO05D002245 4.4e-06 54.7 90 43.3
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.8e-06 54.3 93 43.0
Phvul.003G181200 Phaseolus vulgaris HOM05D019240 ORTHO05D002245 5.8e-06 54.3 57 49.1
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 5.8e-06 54.3 53 58.5
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 5.8e-06 54.3 55 56.4
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 5.8e-06 54.3 93 45.2
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 7.6e-06 53.9 52 59.6
FAN16G2212 Fragaria x ananassa HOM05D014462 ORTHO05D018947 7.6e-06 53.9 99 36.4
FAN21G2635 Fragaria x ananassa HOM05D014462 ORTHO05D018947 7.6e-06 53.9 100 38.0
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 7.6e-06 53.9 57 54.4
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 7.6e-06 53.9 52 55.8
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 9.9e-06 53.5 79 46.8
Lalb_Chr20g0108741 Lupinus albus HOM05D002385 ORTHO05D002245 9.9e-06 53.5 94 40.4
Medtr4g112890 Medicago truncatula HOM05D019240 ORTHO05D002245 9.9e-06 53.5 57 47.4
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 9.9e-06 53.5 82 43.9
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 9.9e-06 53.5 94 42.6


User provided reference genes

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