Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 2068.1 1082 100.0
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1524.6 1096 73.3
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1499.6 1126 70.4
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1493.4 1160 68.6
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1493.4 1126 71.8
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1473.4 1186 66.9
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1389.8 1152 65.0
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1384.8 1151 65.1
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1349.0 1142 64.4
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1346.3 1133 63.9
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1340.9 1137 65.3
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1329.7 1133 62.4
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1323.5 1143 62.8
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1322.8 1143 62.8
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1316.2 1143 62.7
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1312.7 1143 62.6
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1312.0 1133 62.6
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1309.7 1138 61.2
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1301.6 1149 62.7
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1292.7 1154 61.8
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1286.2 1140 60.4
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1285.8 1136 62.3
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1285.4 1144 62.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1283.1 1143 61.3
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1273.1 1162 60.9
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1268.4 1134 61.6
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1265.4 1083 63.2
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1252.7 1127 61.7
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1251.9 1114 59.6
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1236.5 1132 59.9
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1235.7 1138 60.0
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1224.9 1182 57.8
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1220.7 1142 59.5
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1217.2 1132 59.5
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1210.3 1123 58.5
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1202.2 1237 55.7
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1202.2 1125 60.2
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1194.1 1132 58.0
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1181.4 1141 57.2
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1180.6 1125 57.9
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1179.1 1114 57.1
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1175.2 1155 56.7
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1174.1 1096 58.7
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1172.5 1142 56.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1171.0 1098 58.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1167.5 1122 58.3
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1164.4 1166 55.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1161.4 1142 56.2
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1159.4 1101 58.5
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1159.1 1141 55.7
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1157.5 1137 56.0
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1157.5 1129 54.8
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1156.4 1112 58.1
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1148.3 1134 56.3
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1143.3 1107 56.8
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1136.7 1125 56.0
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1135.6 1135 55.3
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1133.2 1137 55.1
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1129.8 1124 56.6
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1126.7 1145 56.4
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1125.9 1137 55.1
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1122.8 1106 56.6
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1120.9 1124 56.0
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1118.6 1130 56.5
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1112.4 1085 56.1
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1112.4 1129 54.9
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1103.2 1125 54.9
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1101.7 1129 54.9
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1100.5 1126 54.9
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1100.5 1138 54.7
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1100.1 1124 55.2
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1095.5 1128 54.8
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1095.1 1118 54.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1086.6 1077 56.0
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1081.6 1125 54.2
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 2.3e-295 1019.2 1143 48.6
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 3.9e-295 1018.5 1042 54.7
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 3.6e-293 1011.9 1287 47.9
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 1.9e-270 936.4 1347 44.5
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.3e-258 897.1 1132 45.0
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.6e-256 890.2 740 64.7
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 6.7e-247 858.2 1081 45.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.9e-242 842.8 831 56.0
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 8.3e-237 824.7 766 59.4
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 5.9e-227 792.0 935 49.0
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 3.6e-224 782.7 741 57.6
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.8e-220 770.4 746 57.6
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.8e-220 770.4 810 54.3
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.3e-201 706.4 530 70.8
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 4.8e-184 649.4 526 65.2
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.1e-175 620.2 444 73.0
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 7.1e-164 582.4 447 69.6
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.3e-162 578.2 529 59.9
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 6.3e-160 569.3 1076 36.0
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 3.7e-152 543.5 413 68.8
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.9e-148 531.2 351 75.2
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 3.0e-130 470.7 1164 30.2
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.2e-120 438.0 664 38.1
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 6.6e-109 399.8 1197 28.7
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 4.0e-106 390.6 356 61.8
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 8.6e-101 372.9 276 68.5
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 4.0e-98 364.0 344 59.9
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.9e-92 345.1 547 41.7
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 6.6e-85 320.1 682 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 5.2e-82 310.5 766 31.6
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.8e-80 304.3 470 36.0
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.7e-78 298.1 422 41.9
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.5e-76 291.6 295 56.9
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 4.2e-71 274.2 295 54.6
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.0e-69 268.1 350 45.4
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-60 238.8 230 57.8
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 5.3e-58 230.7 206 61.7
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-57 228.8 149 79.2
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 8.4e-56 223.4 179 67.6
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.5e-54 218.0 138 78.3
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 7.9e-54 216.9 250 46.0
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.0e-48 199.9 264 43.2
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.9e-47 195.7 170 62.9
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.2e-47 194.9 144 67.4
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 9.6e-44 183.3 141 68.1
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 5.9e-41 174.1 174 57.5
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 5.0e-40 171.0 235 46.4
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.0e-32 146.7 221 42.1
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.3e-32 146.4 281 39.9
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-32 146.0 222 41.4
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.1e-31 143.3 161 49.1
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.4e-31 142.9 138 55.1
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 3.2e-31 141.7 1116 21.8
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 6.3e-27 127.5 539 23.2
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 3.4e-25 121.7 1153 22.7
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 4.5e-25 121.3 118 57.6
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.7e-24 119.4 143 49.7
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 4.2e-23 114.8 248 37.5
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 9.4e-23 113.6 152 46.1
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.2e-22 113.2 91 67.0
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 8.8e-21 107.1 100 49.0
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.8e-19 102.1 73 75.3
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-17 95.9 61 72.1
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 2.0e-17 95.9 95 47.4
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 2.9e-16 92.0 114 45.6
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 5.0e-16 91.3 574 21.8
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.0e-16 91.3 151 43.7
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 1.9e-15 89.4 321 28.7
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.2e-15 88.2 77 57.1
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 3.6e-14 85.1 78 65.4
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 5.2e-13 81.3 61 67.2
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 2.6e-12 79.0 104 46.2
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 3.3e-12 78.6 104 47.1
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 2.8e-11 75.5 51 66.7
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 1.7e-08 66.2 71 53.5
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 2.5e-07 62.4 129 32.6


User provided reference genes

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