Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 2.9e-64 248.4 130 100.0
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 3.5e-41 171.8 125 76.8
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 3.5e-41 171.8 125 76.8
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 8.0e-38 160.6 125 68.0
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.4e-37 159.8 126 68.3
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 8.9e-37 157.1 142 60.6
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.3e-35 153.3 128 68.0
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.7e-35 151.8 127 68.5
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 8.3e-35 150.6 126 62.7
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 1.2e-33 146.7 125 61.6
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 4.6e-33 144.8 130 63.8
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 7.8e-33 144.1 128 64.8
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 1.0e-32 143.7 126 65.1
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.3e-32 143.3 128 65.6
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 2.3e-32 142.5 125 64.0
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 2.3e-32 142.5 129 62.0
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 3.9e-32 141.7 127 63.8
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 6.6e-32 141.0 132 59.1
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 6.6e-32 141.0 127 67.7
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 6.6e-32 141.0 131 67.2
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 6.6e-32 141.0 134 59.7
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 8.6e-32 140.6 127 59.1
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 8.6e-32 140.6 130 60.0
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 8.6e-32 140.6 129 67.4
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 8.6e-32 140.6 125 63.2
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 1.1e-31 140.2 127 60.6
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 1.1e-31 140.2 135 57.8
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 1.9e-31 139.4 127 65.4
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 2.5e-31 139.0 129 58.1
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.5e-31 139.0 126 62.7
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.5e-31 139.0 127 67.7
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 3.3e-31 138.7 126 65.1
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 4.3e-31 138.3 127 59.1
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 4.3e-31 138.3 127 60.6
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 5.6e-31 137.9 127 59.1
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 5.6e-31 137.9 125 60.8
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 5.6e-31 137.9 127 64.6
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 7.3e-31 137.5 100 78.0
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 9.5e-31 137.1 125 60.8
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 9.5e-31 137.1 127 58.3
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 9.5e-31 137.1 127 58.3
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 9.5e-31 137.1 125 60.8
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 9.5e-31 137.1 124 62.9
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 1.2e-30 136.7 128 60.2
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.2e-30 136.7 136 61.8
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 1.2e-30 136.7 132 59.8
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 1.6e-30 136.3 127 58.3
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 2.1e-30 136.0 125 60.0
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 2.1e-30 136.0 127 59.1
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 2.1e-30 136.0 127 59.1
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 2.1e-30 136.0 126 59.5
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 2.8e-30 135.6 129 60.5
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 2.8e-30 135.6 126 64.3
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 2.8e-30 135.6 127 63.8
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 2.8e-30 135.6 127 59.8
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 3.6e-30 135.2 128 60.2
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.6e-30 135.2 128 60.2
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 3.6e-30 135.2 129 62.8
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 4.7e-30 134.8 129 65.1
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 4.7e-30 134.8 130 62.3
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 6.2e-30 134.4 126 63.5
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 6.2e-30 134.4 126 61.1
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 6.2e-30 134.4 145 55.2
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 6.2e-30 134.4 127 60.6
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 1.1e-29 133.7 128 57.0
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 1.1e-29 133.7 127 62.2
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 1.1e-29 133.7 148 54.1
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.1e-29 133.7 127 65.4
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 2.3e-29 132.5 138 57.2
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 3.1e-29 132.1 127 57.5
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 3.1e-29 132.1 133 57.1
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 4.0e-29 131.7 125 58.4
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 4.0e-29 131.7 126 63.5
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 5.2e-29 131.3 127 57.5
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 6.8e-29 131.0 135 55.6
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 8.9e-29 130.6 138 54.3
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 8.9e-29 130.6 132 53.0
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.2e-28 130.2 127 55.1
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 1.5e-28 129.8 125 58.4
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.5e-28 129.8 130 56.9
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.5e-28 129.8 127 60.6
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 2.6e-28 129.0 140 56.4
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.6e-28 129.0 137 54.0
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 3.4e-28 128.6 137 54.0
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 4.4e-28 128.3 132 61.4
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 7.5e-28 127.5 129 61.2
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 7.5e-28 127.5 144 53.5
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 7.5e-28 127.5 137 54.7
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 9.9e-28 127.1 129 56.6
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 9.9e-28 127.1 128 55.5
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.3e-27 126.7 134 56.7
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.3e-27 126.7 128 63.3
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.2e-27 125.9 122 57.4
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.2e-27 125.9 125 61.6
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.2e-27 125.9 140 52.9
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 2.9e-27 125.6 125 61.6
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 4.9e-27 124.8 124 58.1
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 6.4e-27 124.4 128 62.5
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.1e-26 123.6 163 46.0
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 1.4e-26 123.2 163 46.0
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 2.4e-26 122.5 127 59.8
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.2e-26 122.1 128 63.3
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 3.2e-26 122.1 129 55.8
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 3.2e-26 122.1 118 55.9
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 3.2e-26 122.1 131 52.7
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 4.1e-26 121.7 130 55.4
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 5.4e-26 121.3 125 60.8
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 9.2e-26 120.6 130 53.8
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 2.7e-25 119.0 127 59.1
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 3.5e-25 118.6 126 60.3
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 4.6e-25 118.2 124 58.9
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 4.6e-25 118.2 121 57.9
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 6.0e-25 117.9 121 56.2
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 6.0e-25 117.9 122 54.9
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.3e-24 116.7 123 52.0
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 2.3e-24 115.9 120 53.3
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 2.3e-24 115.9 124 58.9
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 3.0e-24 115.5 123 52.8
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 3.9e-24 115.2 128 53.9
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 1.1e-23 113.6 144 47.2
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 1.1e-23 113.6 161 48.4
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 1.5e-23 113.2 133 50.4
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.9e-23 112.8 122 55.7
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 1.9e-23 112.8 128 57.8
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.5e-23 112.5 148 52.0
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 2.5e-23 112.5 121 54.5
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.3e-23 112.1 148 52.0
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.3e-23 112.1 148 52.0
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.3e-23 111.7 123 51.2
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 5.6e-23 111.3 124 50.8
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 7.3e-23 110.9 147 46.9
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 4.7e-22 108.2 117 51.3
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 6.2e-22 107.8 123 47.2
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 5.2e-21 104.8 150 45.3
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 6.8e-21 104.4 132 47.0
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 6.8e-21 104.4 156 46.8
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 8.9e-21 104.0 119 52.1
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 2.6e-20 102.4 117 49.6
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.4e-18 96.7 126 52.4
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 1.9e-18 96.3 103 54.4
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 4.2e-18 95.1 95 51.6
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 2.7e-17 92.4 154 42.2
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 6.0e-17 91.3 159 41.5
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.7e-16 89.7 150 40.0
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 5.6e-15 84.7 160 36.9
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 2.1e-14 82.8 104 46.2
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 2.4e-13 79.3 149 36.9
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 1.5e-12 76.6 102 46.1
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 1.5e-12 76.6 54 59.3
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 1.7e-08 63.2 109 42.2
Nitab4.5_0000957g0030 Nicotiana tabacum HOM05D004757 ORTHO05D005743 5.6e-07 58.2 55 65.5
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 1.6e-06 56.6 100 39.0
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 8.1e-06 54.3 99 40.4


User provided reference genes

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