Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19551 Davidia involucrata HOM05D000072 ORTHO05D000026 3.7e-38 161.4 103 100.0
Thecc.09G175400 Theobroma cacao HOM05D000072 ORTHO05D000026 3.9e-19 98.2 65 75.4
Haze_16649 Corylus avellana HOM05D000072 ORTHO05D000026 1.9e-18 95.9 65 75.4
Medtr2g036440 Medicago truncatula HOM05D000072 ORTHO05D000026 3.3e-18 95.1 66 69.7
Gohir.A05G004232 Gossypium hirsutum HOM05D000072 ORTHO05D000026 7.3e-18 94.0 67 73.1
QL02p098320 Quercus lobata HOM05D000072 ORTHO05D000026 7.3e-18 94.0 61 75.4
CiPaw.07G193400 Carya illinoinensis HOM05D000072 ORTHO05D000026 3.6e-17 91.7 65 72.3
Gohir.D05G004800 Gossypium hirsutum HOM05D000072 ORTHO05D000026 1.1e-16 90.1 62 72.6
Gorai.009G004600 Gossypium raimondii HOM05D000072 ORTHO05D000026 1.1e-16 90.1 62 72.6
Psat1g147480 Pisum sativum HOM05D000072 ORTHO05D000026 1.1e-16 90.1 58 74.1
Psat1g147520 Pisum sativum HOM05D000072 ORTHO05D000026 1.4e-16 89.7 66 66.7
Haze_16648 Corylus avellana HOM05D000072 ORTHO05D000026 1.8e-16 89.4 59 74.6
CiPaw.07G193600 Carya illinoinensis HOM05D000072 ORTHO05D000026 4.0e-16 88.2 65 70.8
Gohir.A05G004248 Gossypium hirsutum HOM05D000072 ORTHO05D000026 5.3e-16 87.8 67 70.1
Lj6g0018489 Lotus japonicus HOM05D000072 ORTHO05D000026 9.0e-16 87.0 57 75.4
HanXRQChr12g0365471 Helianthus annuus HOM05D000072 ORTHO05D000026 2.6e-15 85.5 65 66.2
RcHm_v2.0_Chr4g0401211 Rosa chinensis HOM05D000072 ORTHO05D000026 3.4e-15 85.1 101 49.5
Glyma.09G055900 Glycine max HOM05D000072 ORTHO05D000026 5.8e-15 84.3 66 65.2
Glyma.15G162000 Glycine max HOM05D000072 ORTHO05D000026 5.8e-15 84.3 66 65.2
VMungo1309G1825 Vigna mungo HOM05D002128 ORTHO05D002497 5.8e-15 84.3 66 65.2
TPR.G20571 Trifolium pratense HOM05D000072 ORTHO05D000026 9.9e-15 83.6 67 61.2
ECA236G4120 Erigeron canadensis HOM05D000041 ORTHO05D000026 1.7e-14 82.8 65 63.1
Prupe.1G083000 Prunus persica HOM05D000072 ORTHO05D000026 1.7e-14 82.8 102 50.0
Lsat_1_v5_gn_8_67921 Lactuca sativa HOM05D000072 ORTHO05D000026 2.2e-14 82.4 61 68.9
Gorai.009G004700 Gossypium raimondii HOM05D000072 ORTHO05D000026 2.9e-14 82.0 67 67.2
TPR.G32632 Trifolium pratense HOM05D000072 ORTHO05D000026 2.9e-14 82.0 66 60.6
Lsat_1_v5_gn_8_67901 Lactuca sativa HOM05D000072 ORTHO05D000026 3.8e-14 81.6 63 63.5
Phvul.009G239500 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 3.8e-14 81.6 66 63.6
RcHm_v2.0_Chr4g0401231 Rosa chinensis HOM05D000072 ORTHO05D000026 4.9e-14 81.3 62 66.1
ECA236G2088 Erigeron canadensis HOM05D000072 ORTHO05D000026 6.4e-14 80.9 64 60.9
Gohir.D05G004700 Gossypium hirsutum HOM05D000072 ORTHO05D000026 6.4e-14 80.9 62 64.5
Gorai.009G004500 Gossypium raimondii HOM05D000072 ORTHO05D000026 6.4e-14 80.9 62 64.5
MBI16_g31787_MAGBIO Magnolia biondii HOM05D000072 ORTHO05D000026 8.4e-14 80.5 64 60.9
Glyma.15G161500 Glycine max HOM05D000072 ORTHO05D000026 1.1e-13 80.1 53 71.7
HanXRQChr05g0142101 Helianthus annuus HOM05D000072 ORTHO05D000026 1.1e-13 80.1 66 59.1
Lalb_Chr18g0052301 Lupinus albus HOM05D000072 ORTHO05D000026 1.1e-13 80.1 57 68.4
Medtr2g036500 Medicago truncatula HOM05D000072 ORTHO05D000026 1.4e-13 79.7 66 60.6
Duzib151G0802 Durio zibethinus HOM05D000072 ORTHO05D000026 1.9e-13 79.3 52 75.0
HanXRQChr05g0159311 Helianthus annuus HOM05D000072 ORTHO05D000026 2.4e-13 79.0 51 70.6
Phvul.009G239700 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 2.4e-13 79.0 55 69.1
VMungo1309G1469 Vigna mungo HOM05D000072 ORTHO05D000026 3.2e-13 78.6 69 59.4
arahy.Tifrunner.gnm1.ann1.HZGV61 Arachis hypogaea HOM05D000072 ORTHO05D000026 4.2e-13 78.2 66 59.1
arahy.Tifrunner.gnm1.ann1.P6YVRU Arachis hypogaea HOM05D000072 ORTHO05D000026 4.2e-13 78.2 67 61.2
Thecc.09G175300 Theobroma cacao HOM05D000072 ORTHO05D000026 4.2e-13 78.2 66 62.1
CiPaw.08G035300 Carya illinoinensis HOM05D000072 ORTHO05D000026 5.4e-13 77.8 65 61.5
Gohir.A05G004216 Gossypium hirsutum HOM05D000072 ORTHO05D000026 5.4e-13 77.8 62 61.3
FAN07G2031 Fragaria x ananassa HOM05D000072 ORTHO05D000026 7.1e-13 77.4 69 62.3
Lj6g0001608 Lotus japonicus HOM05D000072 ORTHO05D000026 7.1e-13 77.4 66 60.6
VMungo0536G0001 Vigna mungo HOM05D000072 ORTHO05D000026 7.1e-13 77.4 56 66.1
FvH4_4g07910 Fragaria vesca HOM05D000072 ORTHO05D000026 9.3e-13 77.0 69 62.3
FAN12G0767 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.7e-12 75.5 69 60.9
Glyma.09G055700 Glycine max HOM05D000072 ORTHO05D000026 2.7e-12 75.5 50 72.0
RcHm_v2.0_Chr4g0401351 Rosa chinensis HOM05D000072 ORTHO05D000026 2.7e-12 75.5 63 63.5
RcHm_v2.0_Chr4g0401361 Rosa chinensis HOM05D000072 ORTHO05D000026 3.5e-12 75.1 69 62.3
Glyma.15G161600 Glycine max HOM05D000072 ORTHO05D000026 4.6e-12 74.7 56 62.5
MD13G1251000 Malus domestica HOM05D000072 ORTHO05D000026 4.6e-12 74.7 69 59.4
Medtr2g036430 Medicago truncatula HOM05D000072 ORTHO05D000026 4.6e-12 74.7 62 59.7
ECA236G4969 Erigeron canadensis HOM05D000072 ORTHO05D000026 7.8e-12 73.9 51 70.6
FAN22G1984 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.0e-11 73.6 69 59.4
ECA236G1165 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.3e-11 73.2 53 66.0
Glyma.15G161900 Glycine max HOM05D000072 ORTHO05D000026 2.3e-11 72.4 46 76.1
Glyma.15G162200 Glycine max HOM05D000038 ORTHO05D000026 2.3e-11 72.4 56 60.7
Duzib150G1131 Durio zibethinus HOM05D000072 ORTHO05D000026 3.9e-11 71.6 45 77.8
arahy.Tifrunner.gnm1.ann1.3N1IMB Arachis hypogaea HOM05D000072 ORTHO05D000026 8.7e-11 70.5 66 54.5
arahy.Tifrunner.gnm1.ann1.IT1CWJ Arachis hypogaea HOM05D000072 ORTHO05D000026 8.7e-11 70.5 66 54.5
Gohir.D05G004850 Gossypium hirsutum HOM05D000072 ORTHO05D000026 8.7e-11 70.5 45 77.8
HanXRQChr05g0141711 Helianthus annuus HOM05D000072 ORTHO05D024685 8.7e-11 70.5 44 77.3
Lj6g0027696 Lotus japonicus HOM05D000072 ORTHO05D000026 8.7e-11 70.5 56 64.3
RcHm_v2.0_Chr4g0401501 Rosa chinensis HOM05D000072 ORTHO05D000026 8.7e-11 70.5 60 61.7
Ca_02030_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000026 1.1e-10 70.1 45 75.6
Duzib150G1223 Durio zibethinus HOM05D000072 ORTHO05D000026 1.1e-10 70.1 45 75.6
ECA236G0179 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.1e-10 70.1 44 75.0
MD13G1250100 Malus domestica HOM05D000072 ORTHO05D000026 1.1e-10 70.1 45 75.6
Glyma.09G056000 Glycine max HOM05D000072 ORTHO05D000026 1.5e-10 69.7 46 73.9
RcHm_v2.0_Chr4g0401331 Rosa chinensis HOM05D000072 ORTHO05D000026 1.5e-10 69.7 56 67.9
Gohir.D05G280700 Gossypium hirsutum HOM05D000072 ORTHO05D000026 2.5e-10 68.9 66 54.5
HanXRQChr06g0174001 Helianthus annuus HOM05D000072 ORTHO05D000026 3.3e-10 68.6 51 64.7
Dinv41213 Davidia involucrata HOM05D000072 ORTHO05D000026 4.3e-10 68.2 50 62.0
Prupe.1G083300 Prunus persica HOM05D000072 ORTHO05D000026 4.3e-10 68.2 45 73.3
ECA236G2321 Erigeron canadensis HOM05D000072 ORTHO05D000026 9.6e-10 67.0 60 55.0
ECA236G3160 Erigeron canadensis HOM05D000072 ORTHO05D000026 9.6e-10 67.0 51 64.7
Glyma.15G161800 Glycine max HOM05D000072 ORTHO05D000026 9.6e-10 67.0 63 50.8
Gohir.A05G279000 Gossypium hirsutum HOM05D000072 ORTHO05D000026 9.6e-10 67.0 47 70.2
ECA236G4634 Erigeron canadensis HOM05D000072 ORTHO05D000026 1.3e-09 66.6 58 60.3
FAN17G0452 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.3e-09 66.6 45 73.3
RcHm_v2.0_Chr4g0401251 Rosa chinensis HOM05D000072 ORTHO05D000026 1.3e-09 66.6 36 86.1
ECA236G1113 Erigeron canadensis HOM05D000072 ORTHO05D000026 2.1e-09 65.9 51 62.7
Lsat_1_v5_gn_8_68001 Lactuca sativa HOM05D000072 ORTHO05D000026 2.1e-09 65.9 43 74.4
RcHm_v2.0_Chr4g0401651 Rosa chinensis HOM05D000072 ORTHO05D000026 2.1e-09 65.9 44 70.5
Prupe.1G082900 Prunus persica HOM05D000072 ORTHO05D000026 2.8e-09 65.5 45 71.1
Gohir.D05G280650 Gossypium hirsutum HOM05D000072 ORTHO05D000026 3.6e-09 65.1 45 68.9
Gorai.009G294100 Gossypium raimondii HOM05D000072 ORTHO05D000026 3.6e-09 65.1 45 68.9
Glyma.09G055800 Glycine max HOM05D000072 ORTHO05D000026 4.8e-09 64.7 41 73.2
HanXRQChr05g0142041 Helianthus annuus HOM05D000072 ORTHO05D000026 4.8e-09 64.7 57 54.4
Gohir.A05G279101 Gossypium hirsutum HOM05D000072 ORTHO05D000026 6.2e-09 64.3 66 53.0
Lj6g0009820 Lotus japonicus HOM05D000072 ORTHO05D000026 6.2e-09 64.3 53 56.6
MD13G1250900 Malus domestica HOM05D000072 ORTHO05D000026 8.1e-09 63.9 45 68.9
MD16G1220300 Malus domestica HOM05D000072 ORTHO05D000026 8.1e-09 63.9 73 53.4
HanXRQChr12g0365461 Helianthus annuus HOM05D000072 ORTHO05D000026 1.8e-08 62.8 55 54.5
Phvul.009G239901 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 3.1e-08 62.0 49 61.2
ECA236G0603 Erigeron canadensis HOM05D000072 ORTHO05D000026 9.0e-08 60.5 43 67.4
Glyma.15G161300 Glycine max HOM05D000072 ORTHO05D000026 9.0e-08 60.5 55 60.0
Prupe.1G083100 Prunus persica HOM05D000072 ORTHO05D000026 2.0e-07 59.3 41 68.3
QL02p098305 Quercus lobata HOM05D000072 ORTHO05D000026 2.6e-07 58.9 45 64.4
Dinv41225 Davidia involucrata HOM05D000072 ORTHO05D000026 4.5e-07 58.2 52 57.7
THA.LOC104817789 Tarenaya hassleriana HOM05D000072 ORTHO05D000026 4.5e-07 58.2 54 48.1
Rhsim11G0031100 Rhododendron simsii HOM05D000072 ORTHO05D000026 7.6e-07 57.4 59 47.5
RhsimUnG0158600 Rhododendron simsii HOM05D000072 ORTHO05D000026 7.6e-07 57.4 63 44.4
Cfa013764 Carpinus fangiana HOM05D000072 ORTHO05D000026 9.9e-07 57.0 65 44.6
Lj4g0001082 Lotus japonicus HOM05D000072 ORTHO05D000026 9.9e-07 57.0 50 56.0
Haze_22421 Corylus avellana HOM05D000072 ORTHO05D000026 1.3e-06 56.6 53 50.9
Haze_22422 Corylus avellana HOM05D000323 ORTHO05D000201 1.3e-06 56.6 65 44.6
RcHm_v2.0_Chr4g0401471 Rosa chinensis HOM05D000038 ORTHO05D000026 1.3e-06 56.6 49 59.2
Rhsim11G0029800 Rhododendron simsii HOM05D000072 ORTHO05D000026 2.2e-06 55.8 46 56.5
GSVIVG01024382001 Vitis vinifera HOM05D000329 ORTHO05D002813 2.2e-06 55.8 53 52.8
QL02p098276 Quercus lobata HOM05D000072 ORTHO05D000026 2.9e-06 55.5 53 49.1
EL10Ac6g13841 Beta vulgaris HOM05D000072 ORTHO05D000026 3.8e-06 55.1 46 52.2
RhsimUnG0158500 Rhododendron simsii HOM05D000072 ORTHO05D000026 3.8e-06 55.1 46 52.2
RhsimUnG0199400 Rhododendron simsii HOM05D000072 ORTHO05D000026 3.8e-06 55.1 46 52.2
vmacro00249 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 3.8e-06 55.1 72 40.3
Rhsim11G0030700 Rhododendron simsii HOM05D000072 ORTHO05D000026 4.9e-06 54.7 46 52.2
Rhsim11G0030900 Rhododendron simsii HOM05D000072 ORTHO05D000026 4.9e-06 54.7 46 52.2
ATR1079G001 Amborella trichopoda HOM05D000072 ORTHO05D000026 6.4e-06 54.3 66 45.5
vmacro00247 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 6.4e-06 54.3 46 50.0
ECA240G0724 Erigeron canadensis HOM05D000072 ORTHO05D000026 8.4e-06 53.9 57 47.4
ECA240G3997 Erigeron canadensis HOM05D000072 ORTHO05D000026 8.4e-06 53.9 52 50.0
Nn1g06170 Nelumbo nucifera HOM05D000072 ORTHO05D000026 8.4e-06 53.9 56 44.6
vmacro00246 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 8.4e-06 53.9 46 52.2


User provided reference genes

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