Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 6.3e-132 474.2 249 100.0
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 4.9e-108 394.8 220 93.2
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 2.3e-105 386.0 220 90.5
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.8e-102 376.3 221 89.1
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.3e-102 375.9 220 88.6
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.0e-102 375.2 220 87.3
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.0e-101 372.9 220 88.6
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 7.5e-101 370.9 218 88.5
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 9.8e-101 370.5 221 87.3
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 9.8e-101 370.5 220 88.2
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.3e-100 370.2 221 87.8
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.3e-100 370.2 220 86.4
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.7e-100 368.6 221 87.8
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.4e-99 366.7 221 86.9
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.0e-97 360.5 220 85.9
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.3e-97 359.4 222 85.1
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 3.9e-97 358.6 220 84.5
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 6.6e-97 357.8 220 83.6
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.1e-96 357.1 220 84.5
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.1e-96 357.1 223 85.2
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.6e-95 353.2 222 83.3
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.6e-95 353.2 220 84.1
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.1e-95 352.8 220 84.1
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 2.8e-95 352.4 220 83.2
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 3.6e-95 352.1 220 84.1
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 3.6e-95 352.1 220 84.1
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 8.0e-95 350.9 221 83.7
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.4e-94 350.1 220 84.1
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.8e-94 349.7 220 83.2
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 2.3e-94 349.4 220 82.3
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 3.1e-94 349.0 221 80.5
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 3.1e-94 349.0 220 83.2
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 5.2e-94 348.2 220 82.3
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 6.8e-94 347.8 220 83.2
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 1.2e-93 347.1 222 82.4
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 1.5e-93 346.7 220 81.8
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 3.4e-93 345.5 220 80.9
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 4.4e-93 345.1 221 81.9
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 4.4e-93 345.1 220 82.3
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 4.4e-93 345.1 220 80.5
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 5.8e-93 344.7 221 82.4
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 7.5e-93 344.4 221 81.9
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.3e-92 343.6 221 82.4
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.9e-92 342.4 220 80.5
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.9e-92 342.4 220 80.0
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 6.4e-92 341.3 221 81.9
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.4e-92 341.3 220 82.3
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 1.1e-91 340.5 220 78.6
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 3.2e-91 339.0 220 80.0
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.0e-91 337.8 220 79.5
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 2.0e-90 336.3 220 77.7
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 2.7e-90 335.9 220 81.8
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 1.3e-89 333.6 223 78.5
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 3.9e-89 332.0 220 77.7
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 5.0e-89 331.6 222 78.8
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 5.0e-89 331.6 203 84.2
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 6.6e-89 331.3 220 78.2
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.1e-88 330.5 223 78.5
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 1.9e-88 329.7 220 78.6
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 3.3e-88 328.9 220 75.9
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 4.3e-88 328.6 216 79.6
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 5.6e-88 328.2 220 75.5
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 3.6e-87 325.5 218 78.9
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 6.2e-87 324.7 217 78.3
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 6.2e-87 324.7 218 78.9
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.3e-86 322.8 223 76.2
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 4.0e-86 322.0 221 76.5
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 6.8e-86 321.2 220 75.5
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 1.2e-85 320.5 220 76.8
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 7.5e-85 317.8 224 76.3
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.7e-84 316.6 222 75.7
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 2.2e-84 316.2 223 76.7
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 6.4e-84 314.7 220 74.1
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.9e-83 313.2 220 73.2
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 7.1e-83 311.2 212 76.4
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 9.2e-83 310.8 249 67.5
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 9.2e-83 310.8 176 93.2
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.6e-82 310.1 220 72.3
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 3.5e-82 308.9 175 92.0
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 6.0e-82 308.1 221 73.3
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 7.8e-82 307.8 179 87.2
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.0e-81 307.4 266 66.2
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 1.0e-81 307.4 175 90.9
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 1.3e-81 307.0 220 71.8
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 1.7e-81 306.6 220 70.9
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 1.7e-81 306.6 220 71.4
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.3e-81 306.2 222 73.0
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 2.3e-81 306.2 222 74.8
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 3.0e-81 305.8 220 70.9
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 8.6e-81 304.3 220 71.4
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 8.6e-81 304.3 220 71.4
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.5e-80 303.5 223 73.1
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.9e-80 303.1 220 70.5
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.9e-80 303.1 220 70.9
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 3.3e-80 302.4 222 73.9
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 4.3e-80 302.0 220 70.9
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 4.3e-80 302.0 224 74.1
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 7.3e-80 301.2 222 73.0
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.2e-79 300.4 175 88.6
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 3.6e-79 298.9 220 70.5
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 3.6e-79 298.9 220 69.5
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 4.7e-79 298.5 221 70.6
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 4.7e-79 298.5 220 69.5
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 4.7e-79 298.5 222 72.1
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 6.2e-79 298.1 222 71.6
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 4.0e-78 295.4 221 70.1
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 4.0e-78 295.4 226 69.0
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 4.0e-78 295.4 221 70.1
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 8.9e-78 294.3 223 70.0
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 8.9e-78 294.3 269 61.0
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.5e-77 293.5 237 68.8
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 3.4e-77 292.4 223 70.0
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 9.9e-77 290.8 175 87.4
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 1.3e-76 290.4 175 85.7
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.3e-76 290.4 266 62.4
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.3e-76 290.4 240 66.2
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.9e-76 289.3 237 68.4
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 2.9e-76 289.3 223 67.7
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 8.4e-76 287.7 223 66.8
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.4e-75 287.0 175 84.0
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 1.9e-75 286.6 215 72.1
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.4e-75 286.2 178 84.3
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.2e-75 285.8 178 83.7
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.2e-75 285.8 178 83.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.1e-74 283.1 177 80.8
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.7e-74 282.7 178 83.1
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 3.5e-74 282.3 176 83.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.0e-73 279.3 219 67.6
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.9e-72 276.6 199 72.9
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.4e-70 270.4 182 78.6
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.5e-64 249.6 175 72.0
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.3e-60 237.3 210 61.4
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 2.3e-57 226.5 135 86.7
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.9e-56 223.4 167 70.1
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.6e-56 221.9 175 72.6
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 3.7e-47 192.6 134 75.4
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.0e-44 184.5 130 72.3
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 8.4e-44 181.4 167 61.1
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 9.3e-43 177.9 134 67.9
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.1e-35 154.5 128 68.0
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.6e-34 150.6 223 46.2
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.1e-34 148.7 211 49.3
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.3e-32 142.9 91 80.2
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 1.1e-30 137.9 177 42.9
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.4e-29 132.9 236 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.9e-27 127.1 184 37.0
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 1.0e-25 121.3 99 64.6
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 6.7e-25 118.6 199 35.7
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 1.7e-23 114.0 82 69.5
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 2.0e-21 107.1 192 33.3
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.6e-21 106.7 177 45.8
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 5.9e-21 105.5 192 33.9
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 6.3e-15 85.5 65 66.2
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 1.2e-10 71.2 198 29.8
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.4e-09 67.8 49 75.5
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 3.0e-09 66.6 42 83.3
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.2e-08 64.7 42 81.0
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.3e-07 61.2 42 76.2
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 6.3e-07 58.9 93 43.0


User provided reference genes

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