Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1840.1 925 100.0
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1549.6 954 84.2
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1548.1 946 82.2
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1500.3 951 80.9
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 1472.6 1048 73.4
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 1469.9 972 77.4
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 1462.2 955 77.5
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 1459.1 933 81.4
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 1452.6 952 77.1
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1446.8 958 77.2
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1446.8 958 77.2
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 1439.9 952 76.4
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 1437.9 957 77.0
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 1437.2 949 76.3
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 1436.8 953 76.0
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 1429.1 959 76.3
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1427.9 946 77.4
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 1427.9 947 77.3
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 0.0e+00 1424.8 1054 71.7
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 1423.3 952 75.7
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1421.4 950 75.3
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1421.0 948 75.9
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 1421.0 964 75.1
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 1420.2 953 75.7
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1419.8 943 77.1
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1419.1 958 74.9
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1418.7 832 85.1
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 0.0e+00 1418.3 985 74.7
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1414.8 950 75.1
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 1413.7 957 74.8
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 0.0e+00 1412.1 952 76.1
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 1408.7 943 75.9
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 1407.5 949 75.6
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 0.0e+00 1406.3 952 75.6
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1406.0 949 75.6
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 0.0e+00 1401.3 947 75.0
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 1398.6 953 73.7
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 1398.3 950 74.6
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 1395.2 952 73.6
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1392.9 943 75.3
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1392.9 955 74.3
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 1388.2 953 74.2
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 1387.5 952 73.5
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 1378.6 949 72.9
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1364.4 938 74.4
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1362.1 923 74.9
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1359.7 949 73.1
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 1350.9 949 72.4
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 0.0e+00 1343.2 947 72.5
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1342.4 1076 66.2
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 1327.0 948 71.6
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1326.2 943 71.9
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 1325.5 945 71.5
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 1324.3 951 70.3
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 1321.6 947 71.9
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 0.0e+00 1321.2 946 70.6
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 1320.8 945 71.2
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1318.5 949 71.0
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 0.0e+00 1318.1 841 79.5
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1315.8 941 71.5
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1307.7 948 70.3
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 0.0e+00 1305.8 952 69.3
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1305.0 922 73.3
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 0.0e+00 1303.9 951 69.9
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1301.2 922 72.9
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1293.1 952 69.0
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 1293.1 973 69.1
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1290.4 952 68.9
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 0.0e+00 1289.6 952 69.4
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 0.0e+00 1289.2 948 70.6
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 0.0e+00 1288.5 954 69.2
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 0.0e+00 1287.7 952 69.2
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 0.0e+00 1285.4 952 68.6
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 0.0e+00 1284.6 947 69.1
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 0.0e+00 1283.5 947 69.1
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 0.0e+00 1281.5 954 69.0
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1280.8 947 69.0
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1276.2 951 67.8
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1274.6 951 68.1
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 0.0e+00 1272.7 956 68.9
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1271.5 947 68.4
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1268.4 948 69.4
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1266.5 941 68.9
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 0.0e+00 1261.5 927 70.3
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 0.0e+00 1253.8 950 67.7
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 0.0e+00 1248.8 956 66.7
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1245.3 928 69.6
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1244.6 953 67.4
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 0.0e+00 1202.6 953 65.9
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 0.0e+00 1200.7 939 67.4
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1196.0 952 66.7
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 0.0e+00 1188.7 961 64.9
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1182.2 842 71.9
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 0.0e+00 1177.2 951 64.0
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 0.0e+00 1149.0 950 61.8
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 0.0e+00 1130.2 944 62.3
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 6.3e-312 1074.7 835 69.1
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 4.8e-310 1067.8 923 62.6
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 2.5e-306 1055.4 968 57.1
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 2.5e-295 1018.8 941 59.6
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 2.6e-271 939.1 887 59.0
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 1.4e-269 933.3 861 58.5
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 4.3e-258 895.2 962 50.5
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 5.9e-252 874.8 966 49.8
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 1.0e-243 847.4 965 49.0
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 1.1e-240 837.4 974 48.3
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.9e-229 800.0 505 80.2
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 2.9e-214 749.6 731 56.0
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 2.8e-201 706.4 946 46.0
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 1.8e-195 687.2 1028 39.8
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 5.5e-189 665.6 401 82.3
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 1.1e-176 624.8 733 49.9
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 5.2e-163 579.3 486 62.8
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 1.6e-156 557.8 332 82.2
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 5.7e-146 522.7 447 61.3
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 5.9e-135 486.1 507 50.9
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.6e-116 424.9 259 82.2
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 1.1e-107 395.6 316 65.8
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 1.2e-106 392.1 1004 32.3
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 6.5e-81 306.6 282 58.2
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.1e-80 305.8 967 27.3
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 1.8e-78 298.5 553 36.7
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 1.1e-72 279.3 263 58.2
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 1.2e-71 275.8 1218 25.0
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 3.9e-54 217.6 173 63.0
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 1.3e-52 212.6 119 86.6
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 4.1e-51 207.6 152 69.1
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 4.1e-51 207.6 152 69.1
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.3e-46 191.8 99 91.9
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 1.3e-41 176.0 126 70.6
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 5.5e-40 170.6 97 81.4
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 1.2e-39 169.5 116 69.8
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 1.6e-39 169.1 166 56.6
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 3.6e-39 167.9 152 59.9
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.4e-38 166.0 81 95.1
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 2.3e-38 165.2 97 80.4
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 4.0e-38 164.5 81 92.6
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 5.2e-38 164.1 144 56.9
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 9.1e-35 153.3 115 63.5
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.3e-33 148.7 87 83.9
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.9e-33 148.3 87 83.9
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.9e-33 148.3 87 83.9
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.8e-33 147.9 87 83.9
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 5.0e-33 147.5 87 82.8
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 6.6e-33 147.1 87 83.9
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 8.6e-33 146.7 119 59.7
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.2e-32 144.4 87 82.8
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.2e-32 144.4 87 82.8
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 9.5e-32 143.3 113 62.8
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.2e-31 142.9 87 81.6
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 5.7e-29 134.0 187 42.2
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 2.4e-27 128.6 65 86.2
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 3.1e-27 128.3 66 83.3
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 9.2e-27 126.7 134 49.3
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 4.5e-26 124.4 68 80.9
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 5.0e-25 120.9 74 73.0
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 2.1e-23 115.5 115 54.8
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 7.5e-21 107.1 58 87.9
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 4.1e-19 101.3 49 93.9
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.6e-18 99.4 49 89.8
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 5.2e-14 84.3 39 94.9
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 1.1e-11 76.6 59 69.5
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.2e-11 75.1 47 76.6
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.0e-09 70.1 51 70.6
Peaxi162Scf00164g00093 Petunia axillaris HOM05D011468 ORTHO05D012657 5.2e-06 57.8 32 84.4


User provided reference genes

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