Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 5.3e-48 194.1 105 100.0
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.2e-22 109.0 76 80.3
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-18 96.7 72 75.0
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.0e-18 95.9 98 58.2
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 3.4e-18 95.1 72 75.0
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 7.5e-18 94.0 73 71.2
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 9.8e-18 93.6 72 75.0
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-17 93.2 75 69.3
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.3e-17 93.2 73 72.6
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.3e-17 93.2 73 72.6
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.7e-17 92.8 73 69.9
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.7e-17 92.8 71 73.2
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-17 92.8 71 73.2
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-17 92.8 71 73.2
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-17 92.8 71 73.2
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-17 92.8 71 73.2
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.7e-17 92.8 76 71.1
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.8e-17 92.0 76 67.1
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 3.7e-17 91.7 73 71.2
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 3.7e-17 91.7 72 70.8
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.7e-17 91.7 73 71.2
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.7e-17 91.7 73 69.9
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 4.8e-17 91.3 72 70.8
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 6.3e-17 90.9 76 64.5
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.1e-16 90.1 72 69.4
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.1e-16 90.1 78 69.2
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.1e-16 90.1 72 70.8
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.1e-16 90.1 72 70.8
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.8e-16 89.4 73 69.9
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 2.4e-16 89.0 74 67.6
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.1e-16 88.6 76 64.5
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 4.1e-16 88.2 90 55.6
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.4e-16 87.8 72 68.1
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 9.1e-16 87.0 72 68.1
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 9.1e-16 87.0 73 68.5
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.2e-15 86.7 90 55.6
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.6e-15 86.3 68 69.1
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.6e-15 86.3 72 68.1
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.6e-15 86.3 73 64.4
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 3.5e-15 85.1 72 65.3
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 5.9e-15 84.3 76 64.5
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.9e-15 84.3 72 68.1
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.9e-15 84.3 72 68.1
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.9e-15 84.3 72 68.1
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 5.9e-15 84.3 72 65.3
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 7.7e-15 84.0 79 57.0
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.0e-14 83.6 71 66.2
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.0e-14 83.6 76 60.5
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.0e-14 83.6 76 63.2
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.0e-14 83.6 72 65.3
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.3e-14 83.2 73 64.4
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.3e-14 83.2 72 63.9
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.3e-14 83.2 72 66.7
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.3e-14 83.2 72 68.1
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.7e-14 82.8 72 68.1
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.2e-14 82.4 77 61.0
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 2.2e-14 82.4 73 64.4
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 2.9e-14 82.0 72 66.7
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 3.8e-14 81.6 73 61.6
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 3.8e-14 81.6 76 60.5
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.0e-14 81.3 77 61.0
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 6.5e-14 80.9 73 64.4
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.5e-14 80.5 72 63.9
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 8.5e-14 80.5 76 60.5
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.1e-13 80.1 69 65.2
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.9e-13 79.3 76 59.2
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 5.5e-13 77.8 73 60.3
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 5.5e-13 77.8 76 57.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 7.2e-13 77.4 71 63.4
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 9.5e-13 77.0 67 65.7
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.6e-12 76.3 73 63.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.1e-12 75.9 76 55.3
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.7e-12 75.5 65 67.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 6.1e-12 74.3 69 60.9
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.0e-12 73.9 65 66.2
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.0e-11 73.6 58 74.1
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.3e-11 72.4 67 59.7
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.3e-11 72.4 72 56.9
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 3.0e-11 72.0 69 59.4
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 4.0e-11 71.6 78 52.6
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 4.0e-11 71.6 63 63.5
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.2e-10 70.1 67 58.2
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.2e-10 70.1 74 58.1
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.5e-10 69.7 76 53.9
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.5e-10 69.7 77 54.5
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-10 69.3 59 62.7
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.6e-10 68.9 59 62.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.6e-10 68.9 59 62.7
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 2.6e-10 68.9 76 55.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 5.7e-10 67.8 59 59.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 5.7e-10 67.8 59 59.3
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-09 66.2 50 72.0
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.9e-09 64.7 76 52.6
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 6.3e-09 64.3 73 58.9
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 8.3e-09 63.9 77 50.6
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-08 63.5 72 47.2
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.1e-08 63.5 54 66.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.6e-07 59.7 86 48.8
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 3.5e-07 58.5 54 61.1
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 7.7e-07 57.4 50 58.0
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 7.7e-07 57.4 50 62.0
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.0e-06 57.0 54 64.8
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 6.6e-06 54.3 52 59.6


User provided reference genes

Program Settings