Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 6.9e-248 860.1 420 100.0
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 7.2e-221 770.4 420 90.5
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.2e-212 743.0 420 85.5
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.7e-212 741.9 420 85.5
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 4.8e-209 731.1 420 84.8
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.8e-208 729.2 420 83.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 7.7e-207 723.8 420 83.1
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 4.0e-203 711.4 420 80.2
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 8.2e-201 703.7 420 79.8
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.4e-200 703.0 420 80.2
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 2.0e-199 699.1 420 81.2
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.9e-198 695.3 420 80.5
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 5.0e-198 694.5 420 79.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 8.5e-198 693.7 420 78.1
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.2e-196 689.9 420 77.9
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.7e-196 688.7 420 78.8
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 1.8e-195 686.0 420 78.1
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 3.0e-195 685.3 420 78.8
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 4.0e-195 684.9 420 78.8
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.4e-194 681.8 420 78.6
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.4e-194 681.8 420 76.7
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.4e-194 681.4 420 76.7
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.4e-194 681.4 420 76.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 4.4e-194 681.4 420 78.1
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.7e-193 679.5 420 77.6
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 2.2e-193 679.1 419 78.0
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.7e-193 678.3 420 76.4
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 4.8e-193 677.9 420 78.8
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 5.4e-192 674.5 420 77.4
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.2e-191 673.3 420 77.1
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.7e-191 672.2 420 76.9
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 7.7e-191 670.6 420 76.2
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.1e-189 666.8 420 76.0
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.9e-189 666.0 420 75.5
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.5e-189 665.6 420 76.7
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.2e-189 665.2 420 75.2
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 7.2e-189 664.1 420 76.2
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 9.5e-189 663.7 420 75.5
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 6.1e-188 661.0 420 76.4
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 8.0e-188 660.6 420 76.0
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 8.0e-188 660.6 420 76.0
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.0e-188 660.6 420 75.7
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 1.8e-187 659.4 420 76.4
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.8e-187 659.4 420 76.4
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.8e-187 657.1 420 74.3
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.5e-186 656.4 405 77.5
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.0e-186 656.0 421 76.0
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.7e-186 654.4 420 76.2
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 7.5e-186 654.1 421 74.6
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 2.8e-185 652.1 420 74.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 4.9e-185 651.4 408 77.2
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.1e-184 650.2 417 75.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.4e-184 649.0 420 74.0
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.1e-184 648.7 425 73.6
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 3.1e-184 648.7 420 74.3
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 3.1e-184 648.7 420 73.1
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 9.2e-184 647.1 420 73.6
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 1.2e-183 646.7 420 74.3
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.7e-183 645.6 425 72.9
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.7e-183 645.6 420 74.5
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 7.8e-183 644.0 420 73.6
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.7e-182 642.9 421 75.5
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 2.9e-182 642.1 417 73.9
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 3.8e-182 641.7 420 72.9
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 3.8e-182 641.7 423 75.9
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 5.0e-182 641.3 423 74.2
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.5e-181 639.8 420 73.1
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 7.3e-181 637.5 420 72.1
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.6e-180 636.3 420 73.1
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.3e-179 632.5 420 71.9
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 6.8e-179 630.9 420 72.9
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 2.0e-178 629.4 421 72.9
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.3e-177 626.7 425 70.8
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.7e-177 626.3 425 71.8
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 6.4e-177 624.4 420 70.7
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.8e-176 622.9 419 70.9
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.8e-176 622.9 420 70.5
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 2.4e-176 622.5 421 71.3
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 5.4e-176 621.3 420 73.6
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 2.7e-175 619.0 420 70.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.5e-175 618.6 421 72.4
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.7e-174 616.3 420 70.0
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 3.0e-174 615.5 420 69.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.9e-174 615.1 420 69.0
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 5.6e-173 611.3 424 71.2
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.8e-172 609.0 421 69.8
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 4.0e-171 605.1 420 66.9
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.5e-170 603.2 421 69.8
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 2.2e-169 599.4 420 69.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.2e-167 593.6 422 68.2
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.0e-166 590.5 420 68.8
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 7.3e-165 584.3 422 69.9
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.3e-163 579.3 420 66.0
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 2.3e-163 579.3 420 66.7
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.3e-163 579.3 421 69.6
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.3e-163 579.3 421 69.8
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 6.8e-163 577.8 420 66.7
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 2.6e-162 575.9 420 66.7
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 5.8e-162 574.7 420 66.4
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 5.8e-162 574.7 421 69.4
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 7.5e-162 574.3 420 66.9
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 7.5e-162 574.3 420 66.4
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 9.9e-162 573.9 420 66.4
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 9.9e-162 573.9 377 71.9
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 2.2e-161 572.8 420 66.2
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 2.2e-161 572.8 420 66.2
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 4.6e-159 565.1 421 64.6
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 64.5
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 8.6e-158 560.8 420 64.3
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.1e-155 553.9 420 63.1
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 4.9e-153 545.0 421 62.2
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 4.3e-149 531.9 425 61.2
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.2e-143 513.8 421 58.9
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.1e-139 500.7 357 71.1
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.4e-131 473.0 405 56.3
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 2.0e-130 469.9 251 90.8
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 9.9e-130 467.6 425 54.1
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 5.6e-125 451.8 425 53.2
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 4.2e-120 435.6 406 55.9
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 7.4e-117 424.9 282 71.3
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 3.7e-116 422.5 419 49.4
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 7.6e-114 414.8 422 50.5
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.8e-102 377.1 302 63.9
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 5.9e-98 362.1 412 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.7e-95 353.2 374 46.5
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.1e-93 347.8 255 64.3
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.9e-88 330.5 300 53.3
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 3.7e-76 289.7 317 45.4
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-67 260.8 266 54.1
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 3.4e-61 240.0 134 82.1
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 9.8e-61 238.4 132 88.6
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 2.0e-45 187.6 155 61.9
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.4e-37 160.2 99 76.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-33 147.1 91 76.9
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.2e-27 127.1 74 78.4
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 7.1e-27 125.9 71 80.3
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.6e-26 124.8 100 63.0
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 2.3e-25 120.9 71 78.9
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.1e-24 118.6 104 57.7
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 3.3e-24 117.1 71 77.5
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.3e-24 117.1 71 77.5
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 1.4e-11 75.1 370 23.5
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 3.0e-09 67.4 245 25.7
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 5.1e-09 66.6 245 25.7
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 5.1e-09 66.6 245 25.7
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 5.6e-08 63.2 83 47.0
Migut.E01603 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.1e-07 61.2 247 25.5
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 2.8e-07 60.8 345 24.1
FAN11G3894 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.8e-07 60.8 235 23.0
CBR_g46671 Chara braunii HOM05D014545 ORTHO05D020397 3.7e-07 60.5 344 23.8
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 8.2e-07 59.3 311 26.4
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 1.8e-06 58.2 212 26.4
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 1.8e-06 58.2 234 26.9
HPP92_016716 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.8e-06 58.2 85 42.4
CiPaw.01G227900 Carya illinoinensis HOM05D001477 ORTHO05D001182 2.4e-06 57.8 231 24.7
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 2.4e-06 57.8 416 22.8
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 2.4e-06 57.8 242 22.3
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 3.1e-06 57.4 242 27.7
Lsat_1_v5_gn_5_75660 Lactuca sativa HOM05D000051 ORTHO05D000015 3.1e-06 57.4 244 24.2
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 3.1e-06 57.4 205 25.4
CARHR148020 Cardamine hirsuta HOM05D000051 ORTHO05D000015 4.0e-06 57.0 305 23.3


User provided reference genes

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