Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 1.2e-192 676.4 344 100.0
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.9e-134 483.0 343 75.5
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.3e-131 471.9 327 76.8
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 6.2e-130 468.0 324 77.8
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 7.1e-126 454.5 353 68.3
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 1.2e-125 453.8 330 71.8
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.0e-124 450.7 330 71.8
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.5e-120 436.8 341 70.7
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.7e-119 433.3 328 71.6
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.1e-117 426.4 335 67.5
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.5e-115 420.2 297 73.4
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.5e-115 420.2 325 69.8
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.3e-114 417.2 346 67.9
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.8e-114 416.0 349 65.0
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 8.2e-114 414.5 347 65.7
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.3e-113 411.8 326 68.7
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.3e-113 411.8 326 68.7
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 9.0e-113 411.0 297 70.7
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 4.5e-112 408.7 333 67.0
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 5.9e-112 408.3 262 79.4
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.0e-111 407.5 347 67.1
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.7e-111 406.8 333 66.7
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.2e-111 406.4 342 66.4
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 2.2e-111 406.4 351 64.1
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 3.8e-111 405.6 272 74.6
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.4e-110 403.7 279 73.1
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.9e-110 403.3 305 70.5
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 3.2e-110 402.5 261 77.8
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 4.2e-110 402.1 324 67.3
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 7.2e-110 401.4 309 69.3
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-109 400.6 341 64.2
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 1.6e-109 400.2 350 64.9
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 2.1e-109 399.8 306 69.3
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 2.7e-109 399.4 329 66.3
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 2.7e-109 399.4 266 75.6
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 3.6e-109 399.1 327 65.4
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.6e-109 399.1 262 78.2
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 3.6e-109 399.1 267 75.7
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 3.6e-109 399.1 279 73.8
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.4e-108 397.1 343 64.4
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 1.8e-108 396.7 329 65.3
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.0e-108 396.0 310 69.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.0e-108 396.0 310 69.0
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 3.0e-108 396.0 290 71.7
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 3.9e-108 395.6 341 63.6
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.9e-108 395.6 263 75.7
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 8.8e-108 394.4 268 75.0
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.8e-108 394.4 353 62.6
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 8.8e-108 394.4 325 68.0
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 4.3e-107 392.1 264 74.6
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 5.7e-107 391.7 271 73.1
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.3e-106 390.6 327 64.8
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.7e-106 390.2 326 64.7
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-106 389.8 305 68.2
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 2.2e-106 389.8 349 63.3
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 3.7e-106 389.0 324 67.9
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 2.4e-105 386.3 355 62.0
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 3.1e-105 386.0 292 68.2
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 3.1e-105 386.0 358 62.3
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 3.1e-105 386.0 290 71.0
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 5.3e-105 385.2 327 63.3
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.5e-104 383.6 263 74.1
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 2.0e-104 383.3 323 65.9
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 3.4e-104 382.5 225 84.0
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 5.9e-104 381.7 368 59.5
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 3.2e-102 375.9 263 71.5
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 4.2e-102 375.6 263 73.0
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 5.5e-102 375.2 306 64.7
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 7.2e-102 374.8 308 64.3
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 9.4e-102 374.4 308 62.3
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 9.4e-102 374.4 266 69.5
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 9.4e-102 374.4 279 67.4
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.6e-101 373.6 306 63.4
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 4.7e-101 372.1 311 63.0
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 6.1e-101 371.7 307 62.5
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 6.1e-101 371.7 307 62.5
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.0e-100 370.9 277 68.2
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 2.3e-100 369.8 277 68.2
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 5.1e-100 368.6 304 63.5
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.1e-100 368.6 267 69.3
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 6.7e-100 368.2 321 62.0
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 8.8e-100 367.9 307 61.6
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 7.4e-99 364.8 327 61.8
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 9.7e-99 364.4 298 63.8
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 3.1e-97 359.4 300 63.3
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 5.3e-97 358.6 330 59.4
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 2.6e-96 356.3 350 58.3
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 3.5e-96 355.9 320 63.1
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 5.9e-96 355.1 263 67.7
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 2.5e-94 349.7 323 60.4
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 3.2e-94 349.4 289 65.4
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 5.5e-94 348.6 305 60.7
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.6e-93 347.1 305 60.3
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 2.1e-93 346.7 270 65.6
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 1.8e-92 343.6 460 47.8
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 2.3e-92 343.2 273 64.1
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 2.3e-92 343.2 273 64.1
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 3.0e-92 342.8 273 63.4
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 6.7e-92 341.7 273 63.4
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 1.7e-90 337.0 319 61.4
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 6.3e-90 335.1 234 72.6
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.8e-89 333.6 342 58.5
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 2.7e-88 329.7 318 59.4
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 1.1e-86 324.3 272 59.9
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 5.5e-86 322.0 322 54.7
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 5.2e-84 315.5 289 61.2
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 7.5e-83 311.6 354 50.3
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.1e-81 307.8 214 76.2
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.7e-80 303.1 248 61.7
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 8.5e-79 298.1 332 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 1.5e-78 297.4 220 66.4
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 2.3e-76 290.0 309 52.1
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 2.6e-75 286.6 445 43.6
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 7.5e-75 285.0 198 69.2
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 3.8e-71 272.7 264 59.8
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.6e-69 267.3 142 89.4
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.8e-68 263.8 143 90.2
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.0e-67 260.4 141 89.4
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-64 248.8 205 59.0
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 7.8e-64 248.4 142 84.5
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 1.0e-63 248.1 200 61.5
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 5.6e-54 215.7 124 82.3
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.8e-52 210.7 149 67.1
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 5.1e-31 139.4 178 42.1
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.6e-29 134.4 162 42.0
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.0e-27 127.5 202 45.5
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 3.2e-25 120.2 189 43.9
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 7.1e-25 119.0 177 40.7
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 1.3e-23 114.8 202 36.6
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.1e-22 111.7 88 65.9
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 4.3e-22 109.8 127 51.2
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 1.3e-21 108.2 187 44.4
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.4e-20 104.8 70 68.6
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 6.9e-20 102.4 190 41.1
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-19 101.3 64 71.9
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-19 101.3 64 71.9
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 4.5e-19 99.8 190 40.0
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 9.9e-19 98.6 64 67.2
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 9.9e-19 98.6 64 67.2
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.8e-18 96.7 64 65.6
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 5.5e-17 92.8 186 34.9
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 1.3e-13 81.6 49 81.6
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 6.2e-13 79.3 166 31.9
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.4e-12 78.2 156 35.9
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 3.4e-11 73.6 171 31.0
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 7.9e-08 62.4 160 28.1
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.7e-07 59.3 88 35.2


User provided reference genes

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