Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 6.1e-228 793.9 423 100.0
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 8.1e-188 660.6 415 86.0
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 1.1e-184 650.2 424 83.7
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 9.9e-178 627.1 424 82.1
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 7.6e-170 600.9 444 76.8
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 5.4e-168 594.7 496 70.2
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 7.1e-168 594.3 420 79.0
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 7.1e-168 594.3 438 76.0
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 3.5e-167 592.0 425 76.2
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.3e-164 583.6 429 75.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 3.6e-164 582.0 431 75.9
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 3.1e-163 578.9 431 76.3
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 6.9e-163 577.8 427 75.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.7e-161 573.2 425 75.8
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.4e-161 571.2 411 77.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 9.3e-160 567.4 411 75.7
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.1e-159 566.2 428 75.2
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.1e-159 566.2 425 74.8
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.3e-158 563.5 422 75.1
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.3e-158 562.8 422 75.1
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 1.9e-157 559.7 429 73.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 4.3e-157 558.5 430 74.2
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 7.4e-157 557.8 417 75.3
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.1e-156 556.2 430 73.5
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.8e-156 555.8 430 73.7
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.4e-155 552.7 424 73.1
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.1e-155 552.4 430 73.5
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 5.3e-155 551.6 431 73.1
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 6.9e-155 551.2 424 73.8
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.3e-153 547.0 430 73.0
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.7e-153 546.6 448 68.8
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 4.9e-153 545.0 415 73.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 2.4e-152 542.7 438 71.2
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.2e-151 540.4 423 73.0
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.1e-151 539.7 424 72.9
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 4.6e-151 538.5 424 72.6
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 6.0e-151 538.1 449 68.4
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 6.7e-150 534.6 418 71.8
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.1e-149 533.9 425 70.8
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 1.9e-149 533.1 471 65.8
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.3e-148 530.4 419 72.6
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 6.2e-148 528.1 421 68.9
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.2e-146 523.9 406 74.4
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 5.8e-146 521.5 428 70.3
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.3e-145 520.4 424 68.9
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 3.2e-144 515.8 421 70.8
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 5.5e-144 515.0 433 69.7
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.7e-143 512.7 422 69.0
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 4.6e-143 511.9 419 69.7
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.5e-141 506.9 425 69.6
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 3.3e-141 505.8 427 69.3
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.8e-140 502.7 424 68.6
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.7e-140 502.3 430 68.4
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.1e-139 500.7 427 69.8
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.5e-138 496.9 411 69.1
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 5.9e-138 495.0 430 67.0
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 5.9e-138 495.0 427 68.6
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.7e-137 493.4 292 90.8
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 2.2e-137 493.0 412 68.4
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 7.2e-136 488.0 428 66.6
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 7.2e-136 488.0 424 66.3
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.2e-135 487.3 369 75.6
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.6e-135 486.9 424 66.0
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.6e-135 485.7 431 67.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.3e-134 483.0 419 66.8
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 5.1e-134 481.9 372 73.9
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.9e-133 479.9 400 69.5
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 5.7e-133 478.4 405 69.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 5.7e-133 478.4 428 64.5
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 3.7e-132 475.7 418 67.5
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.8e-131 473.4 428 66.8
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.5e-130 470.3 413 68.3
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 2.6e-130 469.5 416 67.3
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 3.8e-129 465.7 427 67.4
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 5.0e-129 465.3 408 66.9
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 4.2e-128 462.2 429 67.1
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.6e-127 460.3 432 63.2
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.6e-127 460.3 414 66.2
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.0e-126 457.6 429 64.6
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.8e-126 456.8 407 66.1
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 2.3e-126 456.4 424 65.8
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.1e-125 454.1 413 64.6
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 4.4e-125 452.2 373 70.2
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.4e-123 447.2 416 64.2
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 2.4e-123 446.4 416 64.7
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 7.0e-123 444.9 423 64.1
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 3.2e-120 436.0 446 60.5
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 7.2e-120 434.9 417 63.8
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.9e-118 429.1 273 84.2
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.9e-118 429.1 417 63.3
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 2.0e-117 426.8 420 61.0
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.1e-115 419.5 409 64.5
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.1e-115 419.1 402 62.4
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 7.0e-115 418.3 367 65.4
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 3.5e-114 416.0 395 62.0
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 5.0e-113 412.1 312 73.4
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.1e-112 411.0 403 59.8
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-112 410.6 421 59.4
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 1.0e-110 404.4 429 58.3
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-107 394.0 384 60.9
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.4e-107 394.0 384 60.9
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.4e-107 393.3 458 55.2
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 4.5e-106 389.0 417 58.5
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.2e-104 381.7 346 64.7
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 3.4e-101 372.9 426 55.2
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 7.5e-101 371.7 395 60.0
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 7.5e-101 371.7 417 56.6
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.3e-97 360.9 418 57.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 6.1e-95 352.1 257 75.5
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.0e-89 334.7 260 74.2
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 5.0e-89 332.4 425 52.5
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 7.3e-88 328.6 420 50.5
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 8.0e-87 325.1 324 61.1
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 2.9e-84 316.6 303 63.7
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 5.6e-80 302.4 271 66.4
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.4e-75 287.7 269 68.0
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 2.7e-74 283.5 340 52.4
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 8.6e-73 278.5 322 55.0
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 3.1e-70 270.0 194 72.2
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.6e-69 266.9 276 60.1
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 2.9e-68 263.5 276 60.1
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 8.3e-68 261.9 268 63.1
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 8.3e-68 261.9 274 59.9
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.9e-67 260.8 265 61.1
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.2e-66 258.1 413 45.5
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.3e-64 250.0 342 51.8
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.8e-62 244.2 181 75.1
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 3.1e-62 243.4 430 44.9
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.3e-60 238.0 265 54.7
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.3e-57 228.0 266 56.4
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 5.3e-54 216.1 197 65.5
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.0e-53 214.2 443 40.6
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 2.7e-50 203.8 136 76.5
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.0e-49 201.8 432 38.4
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.7e-49 201.1 135 76.3
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 2.3e-49 200.7 266 51.9
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 2.4e-46 190.7 132 78.0
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 5.3e-46 189.5 412 40.3
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 5.8e-45 186.0 182 61.0
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.8e-39 167.2 159 60.4
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 3.4e-37 160.2 159 55.3
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 7.6e-37 159.1 450 33.6
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 7.4e-32 142.5 147 56.5
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-20 104.8 131 52.7
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 6.5e-20 102.8 183 44.3
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.0e-17 95.5 228 40.4
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 3.7e-07 60.5 55 54.5
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.8e-07 60.1 108 39.8
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 7.0e-06 56.2 35 71.4


User provided reference genes

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