Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 3.0e-213 745.0 391 100.0
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 3.5e-60 236.5 324 50.0
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 1.0e-51 208.4 265 50.9
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 1.6e-49 201.1 273 48.4
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 3.5e-44 183.3 370 35.9
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 2.8e-41 173.7 230 43.9
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 2.9e-38 163.7 196 46.9
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 2.9e-38 163.7 177 51.4
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.9e-37 161.0 203 46.8
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 3.2e-37 160.2 281 39.1
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 6.0e-36 156.0 297 39.1
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 7.8e-36 155.6 178 50.6
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 2.3e-35 154.1 266 38.0
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 2.3e-35 154.1 339 36.9
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 5.0e-35 152.9 275 40.7
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 6.6e-35 152.5 197 43.7
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 1.5e-34 151.4 190 47.4
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 7.3e-34 149.1 189 49.2
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.1e-33 147.5 332 36.7
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.1e-33 147.5 332 36.7
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 2.1e-33 147.5 261 42.9
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 2.8e-33 147.1 303 38.6
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 6.2e-33 146.0 254 41.3
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 3.1e-32 143.7 247 41.3
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 5.2e-32 142.9 182 45.6
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 5.2e-32 142.9 179 48.6
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.2e-31 141.7 190 47.9
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 1.5e-31 141.4 202 45.5
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 2.6e-31 140.6 202 44.1
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 2.6e-31 140.6 202 44.1
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 2.6e-31 140.6 202 44.1
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 2.6e-31 140.6 199 44.7
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 5.8e-31 139.4 202 46.5
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 5.8e-31 139.4 184 48.4
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 5.8e-31 139.4 374 34.5
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 7.5e-31 139.0 292 37.3
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 7.5e-31 139.0 237 42.2
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 9.8e-31 138.7 373 34.6
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 1.3e-30 138.3 169 47.9
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.7e-30 137.9 202 46.5
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 2.2e-30 137.5 321 38.3
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 2.2e-30 137.5 151 51.7
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.9e-30 137.1 170 49.4
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 4.9e-30 136.3 199 43.7
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 4.9e-30 136.3 234 41.5
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 4.9e-30 136.3 262 40.1
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 6.4e-30 136.0 286 35.3
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 8.3e-30 135.6 259 37.8
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 1.1e-29 135.2 179 45.8
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.4e-29 134.8 163 47.2
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 3.2e-29 133.7 244 39.3
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 4.1e-29 133.3 183 41.0
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 4.1e-29 133.3 339 34.5
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 5.4e-29 132.9 259 36.7
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.4e-29 132.9 265 39.2
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 7.1e-29 132.5 260 38.1
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 1.2e-28 131.7 164 45.7
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 1.2e-28 131.7 164 45.7
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.6e-28 129.8 332 35.5
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 2.3e-27 127.5 294 34.7
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 5.1e-27 126.3 178 44.9
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.1e-26 125.2 163 45.4
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 2.5e-26 124.0 168 46.4
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 7.3e-26 122.5 163 44.8
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 7.3e-26 122.5 199 41.7
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 2.1e-25 120.9 196 39.8
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 2.8e-25 120.6 179 39.1
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 4.7e-25 119.8 177 42.4
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 1.4e-24 118.2 207 38.6
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 4.0e-24 116.7 209 39.7
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.4e-23 113.6 191 39.3
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 3.4e-23 113.6 202 39.1
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 9.9e-23 112.1 148 46.6
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 1.7e-22 111.3 206 38.3
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 1.1e-21 108.6 170 43.5
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 1.9e-21 107.8 166 41.0
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 3.2e-21 107.1 154 40.3
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 5.4e-21 106.3 166 39.8
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 5.4e-21 106.3 278 32.7
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 7.1e-21 105.9 166 39.8
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 9.2e-21 105.5 150 43.3
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 1.6e-20 104.8 174 39.7
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 2.1e-20 104.4 178 41.0
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 2.1e-20 104.4 189 34.9
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 3.5e-20 103.6 141 44.7
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 6.0e-20 102.8 183 39.3
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 7.8e-20 102.4 204 36.3
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 7.8e-20 102.4 201 36.8
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.0e-19 102.1 158 42.4
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 1.7e-19 101.3 192 35.9
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 2.3e-19 100.9 195 35.9
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 2.3e-19 100.9 213 38.5
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 2.3e-19 100.9 157 38.9
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 3.0e-19 100.5 192 34.9
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 6.6e-19 99.4 161 40.4
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 6.6e-19 99.4 164 40.2
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 6.6e-19 99.4 161 39.1
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 6.6e-19 99.4 145 40.7
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 8.6e-19 99.0 163 41.7
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 8.6e-19 99.0 163 41.7
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 8.6e-19 99.0 285 30.5
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 1.1e-18 98.6 186 35.5
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 9.6e-18 95.5 175 37.7
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 1.2e-17 95.1 131 45.8
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 1.6e-17 94.7 146 39.7
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 2.1e-17 94.4 190 36.3
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 6.2e-17 92.8 190 35.3
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 1.1e-16 92.0 296 30.7
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 5.2e-16 89.7 106 50.0
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.9e-16 89.4 106 50.0
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.2e-15 88.6 186 36.0
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.2e-15 88.6 186 36.0
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.2e-15 88.6 186 36.0
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.2e-15 88.6 186 36.0
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 7.6e-15 85.9 162 37.7
ATR0311G001 Amborella trichopoda HOM05D005305 ORTHO05D006394 2.9e-14 84.0 182 39.0
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.9e-14 84.0 115 44.3
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.4e-14 82.8 186 33.9
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.1e-13 82.0 105 46.7
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 1.4e-13 81.6 161 38.5
ECA248G2956 Erigeron canadensis HOM05D005305 ORTHO05D006394 1.9e-13 81.3 119 40.3
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 8.7e-11 72.4 91 46.2
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.1e-10 72.0 115 40.9
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 1.1e-10 72.0 75 54.7
Rhsim13G0160500 Rhododendron simsii HOM05D051295 ORTHO05D006394 1.6e-09 68.2 165 37.0
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 2.8e-09 67.4 145 32.4
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 2.8e-09 67.4 123 38.2
FAN11G0652 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.6e-09 67.0 101 43.6
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 4.0e-08 63.5 162 28.4
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 5.3e-08 63.2 159 29.6
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 9.0e-08 62.4 158 28.5
FvH4_3g08610 Fragaria vesca HOM05D005305 ORTHO05D006394 9.0e-08 62.4 102 42.2
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-07 62.0 186 29.0
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 1.5e-07 61.6 186 29.0
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 2.0e-07 61.2 172 30.2
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-07 60.8 162 29.0
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-07 60.8 162 29.0
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 7.6e-07 59.3 192 29.7
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.9e-07 58.9 186 28.5
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 3.8e-06 57.0 136 29.4
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 3.8e-06 57.0 140 30.0
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 4.9e-06 56.6 152 32.9
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 8.4e-06 55.8 137 34.3
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.4e-06 55.8 163 29.4
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 8.4e-06 55.8 153 28.1


User provided reference genes

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